RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA473201", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA473201 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26601038 26601038 PRJNA473201_P_NODE_68321_length_250_cov_0.870056_g67579_i0 PRJNA473201 68321 250 0.870056 2.17514 Omnitrophica bacterium RBG_13_46_9 1801818 Bacteria Bacteria 54.7 2.28e-6   NR OGW75973.1 1801818 g67579 i0 34.1 1.74 82 46 98.4 1 1 246 55 128 OGW75973.1 MAG: hypothetical protein A2Z72_04745 [Omnitrophica bacterium RBG_13_46_9] diamond 435 54.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica bacterium RBG_13_46_9
29176758 29176758 PRJNA473201_P_NODE_77929_length_245_cov_0.895349_g77187_i0 PRJNA473201 77929 245 0.895349 2.19360505 Bacteria 2 Bacteria Bacteria 65.1 4.03e-10   NR MCP4652737.1 2035772 g77187 i0 45.9 4.42040816326531 61 33 74.7 0 58 240 6 66 MCP4652737.1 ribose-phosphate pyrophosphokinase [Candidatus Omnitrophota bacterium] diamond 1083 65.1 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
29286573 29286573 PRJNA473201_P_NODE_75549_length_246_cov_0.890173_g74807_i0 PRJNA473201 75549 246 0.890173 2.18982558 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 59.7 4.12e-8   NR MFH1338997.1 2035772 g74807 i0 68.4 1.3780487804878 38 12 46.3 0 2 115 204 241 MFH1338997.1 thrombospondin type 3 repeat-containing protein [Candidatus Omnitrophota bacterium] diamond 339 59.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;