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contig_metadata

27 rows where bioproject = "PRJNA473201" and tax_clade = "PVC group"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 27 ✖

bioproject 1

  • PRJNA473201 · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5548126 5548126 PRJNA473201_P_NODE_76945_length_245_cov_0.895349_g76203_i0 PRJNA473201 76945 245 0.895349 2.19360505 Pseudomonadati 3379134 Bacteria Bacteria 82.4 2.03e-17   NR NIP23489.1 2026778 g76203 i0 53.8 3.79591836734694 78 35 94.3 1 239 9 1 78 NIP23489.1 RNA 2'-phosphotransferase [Phycisphaerae bacterium] diamond 930 82.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae       Phycisphaerae bacterium
15746704 15746704 PRJNA473201_P_NODE_52573_length_285_cov_17.165094_g51831_i0 PRJNA473201 52573 285 17.165094 48.9205179 Opitutus terrae 107709 Bacteria Bacteria 143 1.52e-29   NTclustered gi|177839040|gb|CP001032.1| 452637 g51831 i0 92.929 33.4842105263158 99 5 34 2 15 112 2052834 2052931 Opitutus terrae PB90-1, complete genome blastn 9543 143 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus terrae
19570412 19570412 PRJNA473201_P_NODE_85256_length_241_cov_0.916667_g84514_i0 PRJNA473201 85256 241 0.916667 2.20916747 Saltatorellus ferox 2528018 Bacteria Bacteria 145 3.48e-30   NTclustered gi|1712682957|gb|CP036434.1| 2528018 g84514 i0 80.423 58.3858921161826 189 37 78 0 31 219 3604364 3604176 Planctomycetes bacterium Poly30 chromosome, complete genome blastn 14071 145 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia     Saltatorellus Saltatorellus ferox
22120714 22120714 PRJNA473201_P_NODE_62298_length_260_cov_1.299465_g61556_i0 PRJNA473201 62298 260 1.299465 3.378609 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 94.7 2.32e-20   NR RYD77759.1 2026800 g61556 i0 64.9 0.888461538461538 77 27 88.8 0 259 29 447 523 RYD77759.1 MAG: hypothetical protein EOP84_15150, partial [Verrucomicrobiaceae bacterium] diamond 231 94.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
26601038 26601038 PRJNA473201_P_NODE_68321_length_250_cov_0.870056_g67579_i0 PRJNA473201 68321 250 0.870056 2.17514 Omnitrophica bacterium RBG_13_46_9 1801818 Bacteria Bacteria 54.7 2.28e-6   NR OGW75973.1 1801818 g67579 i0 34.1 1.74 82 46 98.4 1 1 246 55 128 OGW75973.1 MAG: hypothetical protein A2Z72_04745 [Omnitrophica bacterium RBG_13_46_9] diamond 435 54.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica bacterium RBG_13_46_9
26807631 26807631 PRJNA473201_P_NODE_52821_length_285_cov_1.165094_g52079_i0 PRJNA473201 52821 285 1.165094 3.3205179 Bacteria 2 Bacteria Bacteria 56.6 5.7e-7   NR MFT5328049.1 2026779 g52079 i0 37.2 3.57894736842105 94 54 98.9 2 3 284 70 158 MFT5328049.1 carbonic anhydrase [Planctomycetaceae bacterium] diamond 1020 56.6 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium
27486990 27486990 PRJNA473201_P_NODE_76043_length_246_cov_0.890173_g75301_i0 PRJNA473201 76043 246 0.890173 2.18982558 Planctomycetales bacterium 2053591 Bacteria Bacteria 47.4 7.82e-4   NR MCA9139358.1 2053591 g75301 i0 39.2 0.902439024390244 74 26 79.3 2 241 47 29 92 MCA9139358.1 hypothetical protein [Planctomycetales bacterium] diamond 222 47.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales     Planctomycetales bacterium
27613419 27613419 PRJNA473201_P_NODE_78024_length_245_cov_0.895349_g77282_i0 PRJNA473201 78024 245 0.895349 2.19360505 Planctomycetota bacterium 2026780 Bacteria Bacteria 42.7 0.0385   NR MEI8380909.1 2026780 g77282 i0 45.9 0.453061224489796 37 20 45.3 0 157 47 436 472 MEI8380909.1 glycosyltransferase family 9 protein [Planctomycetota bacterium] diamond 111 42.7 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
27739898 27739898 PRJNA473201_P_NODE_32124_length_349_cov_1.623188_g31382_i0 PRJNA473201 32124 349 1.623188 5.66492612 Candidatus Didemnitutus sp. 2814259 Bacteria Bacteria 64.7 2.61e-9   NR MBP6863799.1 2814259 g31382 i0 39.1 0.988538681948424 115 66 97.1 3 10 348 764 876 MBP6863799.1 immunoglobulin domain-containing protein [Candidatus Didemnitutus sp.] diamond 345 64.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Candidatus Didemnitutus Candidatus Didemnitutus sp.
28970993 28970993 PRJNA473201_P_NODE_49848_length_292_cov_1.726027_g49106_i0 PRJNA473201 49848 292 1.726027 5.03999884 Zavarzinella formosa 360055 Bacteria Bacteria 47.4 0.00167   NR WP_020468205.1 360055 g49106 i0 37 1.02739726027397 100 43 88.4 3 291 34 1753 1846 WP_020468205.1 beta strand repeat-containing protein [Zavarzinella formosa] diamond 300 47.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Zavarzinella Zavarzinella formosa
29034347 29034347 PRJNA473201_P_NODE_77968_length_245_cov_0.895349_g77226_i0 PRJNA473201 77968 245 0.895349 2.19360505 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 75.1 1.58e-13   NR PWU11941.1 2026799 g77226 i0 46.2 1.9469387755102 78 40 95.5 1 235 2 1941 2016 PWU11941.1 MAG: hypothetical protein C5B50_22285 [Verrucomicrobiota bacterium] diamond 477 75.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29065795 29065795 PRJNA473201_P_NODE_10728_length_617_cov_2.566176_g9995_i0 PRJNA473201 10728 617 2.566176 15.83330592 Planctomycetota bacterium 2026780 Bacteria Bacteria 84 7.97e-15   NR MSR63205.1 2026780 g9995 i0 47.7 0.427876823338736 88 40 42.8 2 140 403 342 423 MSR63205.1 HYR domain-containing protein [Planctomycetota bacterium] diamond 264 84 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
29176758 29176758 PRJNA473201_P_NODE_77929_length_245_cov_0.895349_g77187_i0 PRJNA473201 77929 245 0.895349 2.19360505 Bacteria 2 Bacteria Bacteria 65.1 4.03e-10   NR MCP4652737.1 2035772 g77187 i0 45.9 4.42040816326531 61 33 74.7 0 58 240 6 66 MCP4652737.1 ribose-phosphate pyrophosphokinase [Candidatus Omnitrophota bacterium] diamond 1083 65.1 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
29286573 29286573 PRJNA473201_P_NODE_75549_length_246_cov_0.890173_g74807_i0 PRJNA473201 75549 246 0.890173 2.18982558 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 59.7 4.12e-8   NR MFH1338997.1 2035772 g74807 i0 68.4 1.3780487804878 38 12 46.3 0 2 115 204 241 MFH1338997.1 thrombospondin type 3 repeat-containing protein [Candidatus Omnitrophota bacterium] diamond 339 59.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30076050 30076050 PRJNA473201_P_NODE_16732_length_486_cov_12.397094_g15990_i0 PRJNA473201 16732 486 12.397094 60.24987684 Luteolibacter sp. 1962973 Bacteria Bacteria 75.5 5.03e-13   NR MEP5351923.1 1962973 g15990 i0 51.6 0.574074074074074 93 43 56.8 2 85 360 84 175 MEP5351923.1 reverse transcriptase domain-containing protein [Luteolibacter sp.] diamond 279 75.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
30138979 30138979 PRJNA473201_P_NODE_61712_length_261_cov_19.271277_g60970_i0 PRJNA473201 61712 261 19.271277 50.29803297 Opitutia bacterium 2026771 Bacteria Bacteria 106 1.5600000000000002e-26   NR HBO57038.1 2026771 g60970 i0 61.2 0.977011494252874 85 33 97.7 0 256 2 71 155 HBO57038.1 endonuclease [Opitutia bacterium] diamond 255 106 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
30424123 30424123 PRJNA473201_P_NODE_80213_length_244_cov_0.900585_g79471_i0 PRJNA473201 80213 244 0.900585 2.1974274 Planctomycetia bacterium 2052181 Bacteria Bacteria 43.1 0.0167   NR NCY03362.1 2052181 g79471 i0 43.1 0.713114754098361 58 28 65.2 1 61 219 55 112 NCY03362.1 hypothetical protein [Planctomycetia bacterium] diamond 174 43.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia       Planctomycetia bacterium
30644725 30644725 PRJNA473201_P_NODE_81053_length_243_cov_0.905882_g80311_i0 PRJNA473201 81053 243 0.905882 2.20129326 Phycisphaerales bacterium 2052180 Bacteria Bacteria 137 1.72e-36   NR MFA6044981.1 2052180 g80311 i0 75.9 0.975308641975309 79 19 97.5 0 7 243 284 362 MFA6044981.1 hypothetical protein [Phycisphaerales bacterium] diamond 237 137 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
30661043 30661043 PRJNA473201_P_NODE_16613_length_488_cov_7.455422_g15871_i0 PRJNA473201 16613 488 7.455422 36.38245936 Candidatus Bathyanammoxibius 2983802 Bacteria Bacteria 66.2 1.36e-9   NR MEK7449764.1 2026780 g15871 i0 59.2 10.2356557377049 49 20 30.1 0 245 99 173 221 MEK7449764.1 c-type cytochrome biogenesis protein CcsB [Planctomycetota bacterium] diamond 4995 66.2 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
30787491 30787491 PRJNA473201_P_NODE_72114_length_248_cov_0.880000_g71372_i0 PRJNA473201 72114 248 0.88 2.1824 Bacteria 2 Bacteria Bacteria 159 3e-43   NR MEN9573094.1 2026799 g71372 i0 92.7 3.96774193548387 82 6 99.2 0 246 1 849 930 MEN9573094.1 Concanavalin A-like lectin/glucanase superfamily [Verrucomicrobiota bacterium] diamond 984 159 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31308419 31308419 PRJNA473201_P_NODE_67955_length_250_cov_0.870056_g67213_i0 PRJNA473201 67955 250 0.870056 2.17514 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 52.8 1.26e-5   NR HTL47411.1 2499141 g67213 i0 46.3 0.648 54 29 64.8 0 50 211 2711 2764 HTL47411.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 162 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
31561724 31561724 PRJNA473201_P_NODE_65316_length_252_cov_1.614525_g64574_i0 PRJNA473201 65316 252 1.614525 4.068603 Pirellulales bacterium 2715253 Bacteria Bacteria 71.6 2.92e-12   NR HWB08540.1 2715253 g64574 i0 52.4 4.98809523809524 84 37 100 2 252 1 1247 1327 HWB08540.1 immunoglobulin domain-containing protein [Pirellulales bacterium] diamond 1257 71.6 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales     Pirellulales bacterium
31687996 31687996 PRJNA473201_P_NODE_28537_length_369_cov_1.753378_g27795_i0 PRJNA473201 28537 369 1.753378 6.46996482 Chthoniobacter sp. 2510640 Bacteria Bacteria 231 1.36e-71   NR MDR3405335.1 2510640 g27795 i0 87 2 123 16 100 0 369 1 280 402 MDR3405335.1 translation elongation factor EF1A family protein [Chthoniobacter sp.] diamond 738 231 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
32447622 32447622 PRJNA473201_P_NODE_81999_length_243_cov_0.905882_g81257_i0 PRJNA473201 81999 243 0.905882 2.20129326 Planctomycetota bacterium 2026780 Bacteria Bacteria 42.7 0.0206   NR MEY3458332.1 2026780 g81257 i0 50 0.617283950617284 50 18 61.7 1 71 220 51 93 MEY3458332.1 hypothetical protein [Planctomycetota bacterium] diamond 150 42.7 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32762778 32762778 PRJNA473201_P_NODE_35700_length_333_cov_1.184615_g34958_i0 PRJNA473201 35700 333 1.184615 3.94476795 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 66.2 1.15e-10   NR GDY20741.1 2026799 g34958 i0 37.7 2.74774774774775 106 58 93.7 4 333 22 77 176 GDY20741.1 NUDIX hydrolase [Verrucomicrobiota bacterium] diamond 915 66.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32762783 32762783 PRJNA473201_P_NODE_54560_length_280_cov_21.932367_g53818_i0 PRJNA473201 54560 280 21.932367 61.4106276 Rhodopirellula bahusiensis 2014065 Bacteria Bacteria 45.4 0.0034   NR MEP4684613.1 2014065 g53818 i0 48.8 0.439285714285714 41 21 43.9 0 72 194 110 150 MEP4684613.1 hypothetical protein [Rhodopirellula bahusiensis] diamond 123 45.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Rhodopirellula Rhodopirellula bahusiensis
32857255 32857255 PRJNA473201_P_NODE_76460_length_246_cov_0.890173_g75718_i0 PRJNA473201 76460 246 0.890173 2.18982558 Planctomycetales bacterium ZRK34 2723666 Bacteria Bacteria 77.4 8.24e-16   NR QNN24803.1 2723666 g75718 i0 65.5 2.25609756097561 55 19 67.1 0 184 20 62 116 QNN24803.1 MGMT family protein [Planctomycetales bacterium ZRK34] diamond 555 77.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales     Planctomycetales bacterium ZRK34

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;