RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA459724", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA459724 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10022257 10022257 PRJNA459724_P_NODE_4108_length_209_cov_57.944444_g3716_i0 PRJNA459724 4108 209 57.944444 121.10388796 Myxococcia 32015 Bacteria Bacteria 315 2.12e-81   NTclustered gi|913610804|gb|CP012333.1| 1391654 g3716 i0 93.81 146.866028708134 210 11 100 2 1 209 3942948 3942740 Labilithrix luteola strain DSM 27648, complete genome blastn 30695 315 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
20220270 20220270 PRJNA459724_P_NODE_4536_length_193_cov_2.640244_g4144_i0 PRJNA459724 4536 193 2.640244 5.09567092 Polyangiales 3031712 Bacteria Bacteria 231 1.9900000000000002e-56   NTclustered gi|913610804|gb|CP012333.1| 1391654 g4144 i0 88.542 113.020725388601 192 20 98 1 1 190 3943118 3942927 Labilithrix luteola strain DSM 27648, complete genome blastn 21813 231 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
28876161 28876161 PRJNA459724_P_NODE_3888_length_221_cov_1.583333_g3496_i0 PRJNA459724 3888 221 1.583333 3.49916593 Corallococcus exiguus 83462 Bacteria Bacteria 75.1 4.07e-14   NR WP_139923969.1 83462 g3496 i0 43.5 0.936651583710407 69 39 93.7 0 10 216 74 142 WP_139923969.1 DNA-methyltransferase [Corallococcus exiguus] diamond 207 75.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus exiguus
29254842 29254842 PRJNA459724_P_NODE_4869_length_183_cov_1.344156_g4477_i0 PRJNA459724 4869 183 1.344156 2.45980548 Polyangiaceae bacterium 2268199 Bacteria Bacteria 79 4.35e-16   NR HQY59846.1 2268199 g4477 i0 57.3 1.22950819672131 75 13 93.4 2 182 12 142 215 HQY59846.1 glycoside hydrolase family 25 protein [Polyangiaceae bacterium] diamond 225 79 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;