RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA459724", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 5 ✖

tax_kingdom 1

  • Pseudomonadati · 5 ✖

bioproject 1

  • PRJNA459724 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20844732 20844732 PRJNA459724_S_NODE_3117_length_151_cov_0.956897_g3114_i0 PRJNA459724 3117 151 0.956897 1.44491447 Bacteria 2 Bacteria Bacteria 100 5.16e-24   NR MEY4094905.1 1978231 g3114 i0 94 2.98013245033113 50 3 99.3 0 1 150 1 50 MEY4094905.1 putative transporter ATP-binding protein YxlF [Acidobacteriota bacterium] diamond 450 101 0.99009900990099 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27897294 27897294 PRJNA459724_P_NODE_1985_length_385_cov_1.719101_g1601_i0 PRJNA459724 1985 385 1.719101 6.61853885 Blastocatellia bacterium 2052146 Bacteria Bacteria 48.9 7.84e-4   NR HXI88449.1 2052146 g1601 i0 56.7 0.233766233766234 30 13 23.4 0 379 290 56 85 HXI88449.1 hypothetical protein [Blastocatellia bacterium] diamond 90 48.9 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
31213165 31213165 PRJNA459724_P_NODE_3135_length_266_cov_2.527426_g2744_i0 PRJNA459724 3135 266 2.527426 6.72295316 Terriglobia bacterium 2081523 Bacteria Bacteria 55.5 1.64e-6   NR MBV9506432.1 2081523 g2744 i0 51.7 0.654135338345865 58 27 64.3 1 257 87 555 612 MBV9506432.1 tail fiber domain-containing protein [Terriglobia bacterium] diamond 174 55.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia       Terriglobia bacterium
32162730 32162730 PRJNA459724_P_NODE_2638_length_308_cov_1.354839_g2247_i0 PRJNA459724 2638 308 1.354839 4.17290412 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 84.7 1.39e-16   NR HET6890529.1 2283092 g2247 i0 42.5 2.02597402597403 106 45 99.4 2 1 306 160 253 HET6890529.1 portal protein [Pyrinomonadaceae bacterium] diamond 624 84.7 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
32574173 32574173 PRJNA459724_S_NODE_1379_length_185_cov_5.193333_g1376_i0 PRJNA459724 1379 185 5.193333 9.60766605 Acidobacteriota bacterium 1978231 Bacteria Bacteria 73.9 7.93e-14   NR MDQ3041655.1 1978231 g1376 i0 83.7 0.697297297297297 43 7 69.7 0 130 2 1 43 MDQ3041655.1 glycine/betaine/sarcosine/D-proline family reductase selenoprotein B [Acidobacteriota bacterium] diamond 129 73.9 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;