RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA459724", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA459724 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18945485 18945485 PRJNA459724_P_NODE_5895_length_151_cov_2.221311_g5503_i0 PRJNA459724 5895 151 2.221311 3.35417961 Chthoniobacter 295577 Bacteria Bacteria 224 2.4699999999999993e-54   NTclustered gi|226525288|gb|FJ872373.1| 156588 g5503 i0 93.421 181.013245033113 152 8 100 2 1 151 15701 15551 Uncultured Verrucomicrobia bacterium clone 118 genomic sequence blastn 27333 224 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
27613398 27613398 PRJNA459724_P_NODE_5944_length_150_cov_1.628099_g5552_i0 PRJNA459724 5944 150 1.628099 2.4421485 Verrucomicrobia bacterium ADurb.Bin122 1852929 Bacteria Bacteria 91.7 4.85e-20   NR OQB94327.1 1852929 g5552 i0 82 1 50 9 100 0 1 150 351 400 OQB94327.1 MAG: Replicative DNA helicase [Verrucomicrobia bacterium ADurb.Bin122] diamond 150 91.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium ADurb.Bin122
31324597 31324597 PRJNA459724_P_NODE_4815_length_184_cov_2.703226_g4423_i0 PRJNA459724 4815 184 2.703226 4.97393584 Pseudomonadati 3379134 Bacteria Bacteria 42.7 0.0172   NR OQB94327.1 1852929 g4423 i0 39.1 1.77717391304348 64 36 99.5 2 1 183 62 125 OQB94327.1 MAG: Replicative DNA helicase [Verrucomicrobia bacterium ADurb.Bin122] diamond 327 42.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium ADurb.Bin122
31624726 31624726 PRJNA459724_P_NODE_5356_length_168_cov_1.748201_g4964_i0 PRJNA459724 5356 168 1.748201 2.93697768 Verrucomicrobia bacterium ADurb.Bin122 1852929 Bacteria Bacteria 56.2 2.29e-7   NR OQB94327.1 1852929 g4964 i0 86.7 0.535714285714286 30 4 53.6 0 167 78 424 453 OQB94327.1 MAG: Replicative DNA helicase [Verrucomicrobia bacterium ADurb.Bin122] diamond 90 56.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium ADurb.Bin122
31877655 31877655 PRJNA459724_P_NODE_2877_length_287_cov_2.565891_g2486_i0 PRJNA459724 2877 287 2.565891 7.36410717 Limisphaerales bacterium 2052186 Bacteria Bacteria 67.4 1.29e-10   NR MCC6824111.1 2052186 g2486 i0 44.1 3.02090592334495 93 51 97.2 1 286 8 2 93 MCC6824111.1 hypothetical protein [Limisphaerales bacterium] diamond 867 67.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales     Limisphaerales bacterium
32321123 32321123 PRJNA459724_P_NODE_3779_length_227_cov_1.707071_g3387_i0 PRJNA459724 3779 227 1.707071 3.87505117 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 60.8 1.29e-9   NR MEY4402908.1 2026799 g3387 i0 57.9 2.12775330396476 57 23 74 1 189 22 1 57 MEY4402908.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 483 60.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;