RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA459724", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA459724 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27834169 27834169 PRJNA459724_P_NODE_3744_length_229_cov_1.760000_g3352_i0 PRJNA459724 3744 229 1.76 4.0304 Victivallis sp. Marseille-Q1 2049020 Bacteria Bacteria 76.3 4.25e-14   NR WP_217704981.1 2717288 g3352 i0 58.1 0.96943231441048 74 31 96.9 0 224 3 211 284 WP_217704981.1 hypothetical protein, partial [Victivallis sp. Marseille-Q1083] diamond 222 76.3 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae Victivallis Victivallis sp. Marseille-Q1083
29760110 29760110 PRJNA459724_P_NODE_3451_length_244_cov_2.353488_g3059_i0 PRJNA459724 3451 244 2.353488 5.74251072 Victivallis sp. Marseille-Q1 2049020 Bacteria Bacteria 106 2.3e-27   NR WP_176014508.1 2717288 g3059 i0 60.5 0.995901639344262 81 26 99.6 1 2 244 13 87 WP_176014508.1 hypothetical protein [Victivallis sp. Marseille-Q1083] diamond 243 106 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae Victivallis Victivallis sp. Marseille-Q1083

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;