RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA459724", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 9 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 9 ✖

bioproject 1

  • PRJNA459724 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10022259 10022259 PRJNA459724_S_NODE_1048_length_198_cov_26.460123_g1045_i0 PRJNA459724 1048 198 26.460123 52.39104354 Pristionchus 54125 Nematoda Nematoda 106 1.3e-18   NTclustered gi|150984424|gb|EF634854.1| 54126 g1045 i0 91.026 13.520202020202 78 7 39 0 56 133 495 572 Pristionchus pacificus small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 2677 106 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
26601015 26601015 PRJNA459724_P_NODE_5281_length_170_cov_3.070922_g4889_i0 PRJNA459724 5281 170 3.070922 5.2205674 Gnathostoma spinigerum 75299 Nematoda Nematoda 61.6 6.56e-11   NR MFH4985130.1 75299 g4889 i0 96.3 0.476470588235294 27 1 47.6 0 1 81 41 67 MFH4985130.1 hypothetical protein [Gnathostoma spinigerum] diamond 81 61.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
29286553 29286553 PRJNA459724_S_NODE_2029_length_168_cov_1.984962_g2026_i0 PRJNA459724 2029 168 1.984962 3.33473616 Brugia timori 42155 Nematoda Nematoda 77.8 4.81e-15   NR VDO12638.1 42155 g2026 i0 79.5 0.785714285714286 44 9 78.6 0 141 10 1 44 VDO12638.1 unnamed protein product [Brugia timori] diamond 132 77.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia timori
29791671 29791671 PRJNA459724_P_NODE_251_length_1123_cov_5.447898_g142_i0 PRJNA459724 251 1123 5.447898 61.17989454 Gnathostoma spinigerum 75299 Nematoda Nematoda 140 1.5099999999999998e-37   NR MFH4985130.1 75299 g142 i0 92.5 0.178984861976848 67 5 17.9 0 541 341 1 67 MFH4985130.1 hypothetical protein [Gnathostoma spinigerum] diamond 201 140 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
29823203 29823203 PRJNA459724_P_NODE_271_length_1082_cov_5.487179_g142_i1 PRJNA459724 271 1082 5.487179 59.37127678 Gnathostoma spinigerum 75299 Nematoda Nematoda 140 1.1e-37   NR MFH4985130.1 75299 g142 i1 92.5 0.185767097966728 67 5 18.6 0 583 783 1 67 MFH4985130.1 hypothetical protein [Gnathostoma spinigerum] diamond 201 140 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
30013099 30013099 PRJNA459724_S_NODE_851_length_209_cov_6.178161_g848_i0 PRJNA459724 851 209 6.178161 12.91235649 Enterobius vermicularis 51028 Nematoda Nematoda 67 1.43e-11   NR VDD96576.1 51028 g848 i0 78.8 1.89473684210526 33 7 47.4 0 2 100 165 197 VDD96576.1 unnamed protein product [Enterobius vermicularis] diamond 396 67 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis
31213164 31213164 PRJNA459724_P_NODE_295_length_1032_cov_6.327019_g142_i2 PRJNA459724 295 1032 6.327019 65.29483608 Gnathostoma spinigerum 75299 Nematoda Nematoda 140 7.38e-38   NR MFH4985130.1 75299 g142 i2 92.5 0.194767441860465 67 5 19.5 0 376 176 1 67 MFH4985130.1 hypothetical protein [Gnathostoma spinigerum] diamond 201 140 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gnathostomatidae Gnathostoma Gnathostoma spinigerum
31356455 31356455 PRJNA459724_S_NODE_956_length_203_cov_4.077381_g953_i0 PRJNA459724 956 203 4.077381 8.27708343 Metazoa 33208 Nematoda Nematoda 61.2 4.21e-10   NR KFD50825.1 68888 g953 i0 63.9 3.65024630541872 36 13 53.2 0 202 95 76 111 KFD50825.1 hypothetical protein M513_08263 [Trichuris suis] diamond 741 61.6 0.993506493506494 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
32479211 32479211 PRJNA459724_S_NODE_3119_length_150_cov_71.226087_g3116_i0 PRJNA459724 3119 150 71.226087 106.8391305 Dirofilaria immitis 6287 Nematoda Nematoda 41.2 0.0293   NR MCP9259222.1 6287 g3116 i0 57.5 0.8 40 17 80 0 146 27 96 135 MCP9259222.1 putative serine acetyltransferase [Dirofilaria immitis] diamond 120 41.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;