RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA459724", tax_clade = "Opisthokonta" and tax_phylum = "Hemichordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA459724 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30581453 30581453 PRJNA459724_S_NODE_1133_length_195_cov_1.856250_g1130_i0 PRJNA459724 1133 195 1.85625 3.6196875 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 45.8 0.00148   NR XP_006821611.1 10224 g1130 i0 54.5 5.6 44 20 67.7 0 185 54 187 230 XP_006821611.1 PREDICTED: 40S ribosomal protein S3a-like [Saccoglossus kowalevskii] diamond 1092 45.8 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
30960947 30960947 PRJNA459724_S_NODE_3094_length_151_cov_1.974138_g3091_i0 PRJNA459724 3094 151 1.974138 2.98094838 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 52.8 2.97e-6   NR XP_002734284.1 10224 g3091 i0 75.9 1.25165562913907 29 7 57.6 0 134 48 414 442 XP_002734284.1 PREDICTED: uncharacterized protein LOC100377119, partial [Saccoglossus kowalevskii] diamond 189 52.8 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;