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contig_metadata

11 rows where bioproject = "PRJNA454503" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA454503 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5545762 5545762 PRJNA454503_P_NODE_16585_length_287_cov_1.486726_g16256_i0 PRJNA454503 16585 287 1.486726 4.26690362 archaeon 1906665 Archaea Archaea 187 7.490000000000001e-59   NR MCQ2818557.1 1906665 g16256 i0 88 1.92334494773519 92 11 96.2 0 287 12 1 92 MCQ2818557.1 ubiquitin-conjugating enzyme E2 [archaeon] diamond 552 187 1 Archaea               archaeon
5546357 5546357 PRJNA454503_P_NODE_59425_length_210_cov_0.872483_g59096_i0 PRJNA454503 59425 210 0.872483 1.8322143 Natronomonas marina 2961939 Archaea Archaea 204 4.8099999999999994e-48   NTclustered gi|2273574514|gb|CP101154.1| 2961939 g59096 i0 84.211 9.75714285714286 209 33 99 0 1 209 35869 36077 Natronomonas marina strain ZY43 chromosome, complete genome blastn 2049 204 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas marina
9370179 9370179 PRJNA454503_P_NODE_34008_length_234_cov_1.502890_g33679_i0 PRJNA454503 34008 234 1.50289 3.5167626 Halorubrum lacusprofundi 2247 Archaea Archaea 355 1.43e-93   NTclustered gi|222451341|gb|CP001365.1| 416348 g33679 i0 94.017 87.9871794871795 234 14 100 0 1 234 1607464 1607697 Halorubrum lacusprofundi ATCC 49239 chromosome 1, complete sequence blastn 20589 355 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum lacusprofundi
10646835 10646835 PRJNA454503_P_NODE_86769_length_201_cov_2.614286_g86440_i0 PRJNA454503 86769 201 2.614286 5.25471486 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 339 1.1999999999999998e-88   NTclustered gi|937513727|gb|CP012850.1| 1353260 g86440 i0 97.015 1 201 6 100 0 1 201 1753275 1753075 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 201 339 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
12572757 12572757 PRJNA454503_P_NODE_75350_length_205_cov_0.902778_g75021_i0 PRJNA454503 75350 205 0.902778 1.8506949 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 95.9 2.07e-24   NR MDF2782721.1 2169593 g75021 i0 96 2.18048780487805 50 2 73.2 0 205 56 5 54 MDF2782721.1 secB [Nitrososphaeraceae archaeon] diamond 447 95.9 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
14471160 14471160 PRJNA454503_P_NODE_45392_length_220_cov_2.377358_g45063_i0 PRJNA454503 45392 220 2.377358 5.2301876 Candidatus Atabeyarchaeum deiterrae 3126526 Archaea Archaea 54.7 0.005   NTclustered gi|2700469309|gb|CP147780.1| 3126526 g45063 i0 96.875 1.16363636363636 32 1 15 0 189 220 463083 463052 MAG: Candidatus Atabeyarchaeum deiterrae isolate SRVP18_Atabeyarchaeia-2 chromosome blastn 256 54.7 1 Archaea             Candidatus Atabeyarchaeum Candidatus Atabeyarchaeum deiterrae
20844610 20844610 PRJNA454503_P_NODE_84337_length_202_cov_0.921986_g84008_i0 PRJNA454503 84337 202 0.921986 1.86241172 uncultured Candidatus Micrarchaeota archaeon 2220064 Archaea Archaea 52.8 0.018   NTclustered gi|2874253904|emb|OY970229.1| 2220064 g84008 i0 100 0.138613861386139 28 0 14 0 7 34 69988 69961 MAG: uncultured Candidatus Micrarchaeota archaeon isolate MFD01476.bin.c.6 genome assembly, chromosome: 1 blastn 28 52.8 1 Archaea   Nanobdellati Candidatus Micrarchaeota         uncultured Candidatus Micrarchaeota archaeon
22118741 22118741 PRJNA454503_P_NODE_24978_length_250_cov_1.375661_g24649_i0 PRJNA454503 24978 250 1.375661 3.4391525 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 462 8.83e-126   NTclustered gi|937513727|gb|CP012850.1| 1353260 g24649 i0 100 20.72 250 0 100 0 1 250 848351 848600 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 5180 462 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
28970962 28970962 PRJNA454503_P_NODE_14248_length_304_cov_2.366255_g13919_i0 PRJNA454503 14248 304 2.366255 7.1934152 Methanoregulaceae archaeon 2485498 Archaea Archaea 44.7 0.0145   NR HNO08674.1 2485498 g13919 i0 33.8 0.671052631578947 68 45 67.1 0 239 36 129 196 HNO08674.1 PKD domain-containing protein [Methanoregulaceae archaeon] diamond 204 44.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae   Methanoregulaceae archaeon
30202295 30202295 PRJNA454503_P_NODE_62772_length_209_cov_0.878378_g62443_i0 PRJNA454503 62772 209 0.878378 1.83581002 archaeon 1906665 Archaea Archaea 70.1 3.24e-12   NR MFA5931580.1 1906665 g62443 i0 64.2 0.760765550239234 53 17 76.1 1 162 4 3 53 MFA5931580.1 4-hydroxy-tetrahydrodipicolinate synthase [archaeon] diamond 159 70.1 1 Archaea               archaeon
31719678 31719678 PRJNA454503_P_NODE_69357_length_207_cov_0.890411_g69028_i0 PRJNA454503 69357 207 0.890411 1.84315077 Fervidicoccus sp. 2060324 Archaea Archaea 44.3 0.00502   NR PNV80394.1 2060324 g69028 i0 53.2 1.2463768115942 47 21 68.1 1 32 172 10 55 PNV80394.1 MAG: thymidine kinase [Fervidicoccus sp.] diamond 258 44.3 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Fervidicoccales Fervidicoccaceae Fervidicoccus Fervidicoccus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;