RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

30 rows where bioproject = "PRJNA454503" and tax_phylum = "Planctomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 30 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA454503 · 30 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1717164 1717164 PRJNA454503_P_NODE_3022_length_689_cov_5.500000_g2725_i0 PRJNA454503 3022 689 5.5 37.895 Humisphaera borealis 2807512 Bacteria Bacteria 604 4.2099999999999986e-168   NTclustered gi|1927742986|gb|CP063458.1| 2807512 g2725 i0 83.188 108.499274310595 690 87 99 18 1 685 5063348 5062683 Humisphaera borealis strain M1803 chromosome, complete genome blastn 74756 604 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales Tepidisphaeraceae Humisphaera Humisphaera borealis
6820400 6820400 PRJNA454503_P_NODE_65806_length_208_cov_0.884354_g65477_i0 PRJNA454503 65806 208 0.884354 1.83945632 Humisphaera borealis 2807512 Bacteria Bacteria 265 2.15e-66   NTclustered gi|1927742986|gb|CP063458.1| 2807512 g65477 i0 89.904 17.9519230769231 208 17 99 4 3 208 5063713 5063508 Humisphaera borealis strain M1803 chromosome, complete genome blastn 3734 265 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales Tepidisphaeraceae Humisphaera Humisphaera borealis
8746911 8746911 PRJNA454503_P_NODE_80927_length_203_cov_0.915493_g80598_i0 PRJNA454503 80927 203 0.915493 1.85845079 Anatilimnocola 2807414 Bacteria Bacteria 94 5.3800000000000005e-21   NR MDP6721410.1 2699754 g80598 i0 63.6 11.7635467980296 66 24 97.5 0 6 203 13 78 MDP6721410.1 AAA family ATPase [Pirellulaceae bacterium] diamond 2388 94.7 0.992608236536431 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae   Pirellulaceae bacterium
9370304 9370304 PRJNA454503_P_NODE_43168_length_223_cov_1.604938_g42839_i0 PRJNA454503 43168 223 1.604938 3.57901174 Gemmataceae bacterium 2052164 Bacteria Bacteria 263 8.4e-66   NTclustered gi|2063814025|emb|LR586051.1| 2052164 g42839 i0 87.892 1 223 27 100 0 1 223 7242577 7242799 Gemmata bacterium CJuql4 whole genome assembly and annotation blastn 223 263 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
10646172 10646172 PRJNA454503_P_NODE_3109_length_679_cov_7.092233_g2810_i0 PRJNA454503 3109 679 7.092233 48.15626207 Paludisphaera borealis 1387353 Bacteria Bacteria 935 0   NTclustered gi|1133581311|gb|CP019082.1| 1387353 g2810 i0 91.545 136.79970544919 686 47 100 9 1 679 122924 123605 Paludisphaera borealis strain PX4 chromosome, complete genome blastn 92887 935 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Paludisphaera Paludisphaera borealis
13195665 13195665 PRJNA454503_P_NODE_1551_length_962_cov_6.864595_g1300_i0 PRJNA454503 1551 962 6.864595 66.0374039 Tepidisphaeraceae bacterium 2876886 Bacteria Bacteria 1044 0   NTclustered gi|2874253799|emb|OY969783.1| 2876886 g1300 i0 86.509 98.943866943867 971 106 100 21 1 962 4554600 4555554 MAG: Tepidisphaeraceae bacterium isolate MFD04580.bin.c.1 genome assembly, chromosome: 1 blastn 95184 1044 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales Tepidisphaeraceae   Tepidisphaeraceae bacterium
14471465 14471465 PRJNA454503_P_NODE_7292_length_417_cov_1.376404_g6963_i0 PRJNA454503 7292 417 1.376404 5.73960468 Rosistilla carotiformis 2528017 Bacteria Bacteria 219 3.739999999999999e-52   NTclustered gi|1712756907|gb|CP036348.1| 2528017 g6963 i0 77.25 128.175059952038 400 73 94 18 5 394 1459611 1460002 Rosistilla carotiformis strain Poly24 chromosome blastn 53449 219 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Rosistilla Rosistilla carotiformis
18293652 18293652 PRJNA454503_P_NODE_11755_length_329_cov_1.242537_g11426_i0 PRJNA454503 11755 329 1.242537 4.08794673 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 377 4.5e-100   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g11426 i0 88.715 101.465045592705 319 23 95 11 19 329 7051680 7051367 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 33382 377 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
18294008 18294008 PRJNA454503_P_NODE_35475_length_232_cov_1.520468_g35146_i0 PRJNA454503 35475 232 1.520468 3.52748576 Lacipirellula limnantheis 2528024 Bacteria Bacteria 130 7.5099999999999985e-34   NR WP_145435677.1 2528024 g35146 i0 84.4 0.995689655172414 77 12 99.6 0 1 231 172 248 WP_145435677.1 APC family permease [Lacipirellula limnantheis] diamond 231 130 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Lacipirellulaceae Lacipirellula Lacipirellula limnantheis
20844134 20844134 PRJNA454503_P_NODE_43617_length_222_cov_2.242236_g43288_i0 PRJNA454503 43617 222 2.242236 4.97776392 Planctomyces sp. SCGC AG-212-M 37635 Bacteria Bacteria 128 3.89e-33   NR OAI56714.1 1799657 g43288 i0 93.2 1 74 5 100 0 222 1 291 364 OAI56714.1 hypothetical protein AYO47_08745 [Planctomyces sp. SCGC AG-212-M04] diamond 222 128 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctomyces Planctomyces sp. SCGC AG-212-M04
22118765 22118765 PRJNA454503_P_NODE_26758_length_244_cov_2.087432_g26429_i0 PRJNA454503 26758 244 2.087432 5.09333408 Pirellulaceae bacterium 2699754 Bacteria Bacteria 65.9 2.63e-10   NR HEV7279208.1 2699754 g26429 i0 96.8 0.381147540983607 31 1 38.1 0 152 244 1 31 HEV7279208.1 DUF1015 domain-containing protein [Pirellulaceae bacterium] diamond 93 65.9 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae   Pirellulaceae bacterium
23395228 23395228 PRJNA454503_P_NODE_90719_length_167_cov_4.292453_g90390_i0 PRJNA454503 90719 167 4.292453 7.16839651 Humisphaera borealis 2807512 Bacteria Bacteria 217 4.69e-52   NTclustered gi|1927742986|gb|CP063458.1| 2807512 g90390 i0 91.72 131.167664670659 157 12 94 1 6 162 5062978 5062823 Humisphaera borealis strain M1803 chromosome, complete genome blastn 21905 217 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales Tepidisphaeraceae Humisphaera Humisphaera borealis
24045729 24045729 PRJNA454503_P_NODE_69099_length_207_cov_0.890411_g68770_i0 PRJNA454503 69099 207 0.890411 1.84315077 Gemmata 113 Bacteria Bacteria 156 1.34e-33   NTclustered gi|1727537522|gb|CP042911.1| 114 g68770 i0 80.556 3.1304347826087 216 30 100 4 1 207 2954944 2955156 Gemmata obscuriglobus strain DSM 5831 chromosome, complete genome blastn 648 156 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata obscuriglobus
24668687 24668687 PRJNA454503_P_NODE_48440_length_217_cov_1.666667_g48111_i0 PRJNA454503 48440 217 1.666667 3.61666739 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 158 3.95e-34   NTclustered gi|1927958621|gb|CP054186.1| 2026777 g48111 i0 87.5 30.4562211981567 136 17 63 0 1 136 2859414 2859549 MAG: Phycisphaeraceae bacterium isolate H1_PLA1 chromosome blastn 6609 158 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
26632968 26632968 PRJNA454503_P_NODE_12801_length_317_cov_3.191406_g12472_i0 PRJNA454503 12801 317 3.191406 10.11675702 Planctomycetota bacterium 2026780 Bacteria Bacteria 44.7 0.00424   NR MBF0196065.1 2026780 g12472 i0 38.5 0.49211356466877 52 32 49.2 0 307 152 58 109 MBF0196065.1 ATP-dependent Clp protease adaptor ClpS [Planctomycetota bacterium] diamond 156 44.7 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
27549988 27549988 PRJNA454503_P_NODE_82524_length_203_cov_0.915493_g82195_i0 PRJNA454503 82524 203 0.915493 1.85845079 Gemmatales bacterium 2838789 Bacteria Bacteria 58.9 3.35e-8   NR HMO35965.1 2838789 g82195 i0 50.9 3.2512315270936 55 27 81.3 0 2 166 50 104 HMO35965.1 Gfo/Idh/MocA family oxidoreductase [Gemmatales bacterium] diamond 660 58.9 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales     Gemmatales bacterium
27581596 27581596 PRJNA454503_P_NODE_34344_length_234_cov_1.127168_g34015_i0 PRJNA454503 34344 234 1.127168 2.63757312 Planctomycetota bacterium 2026780 Bacteria Bacteria 81.6 9.91e-18   NR MCQ3949889.1 2026780 g34015 i0 48.1 0.987179487179487 77 40 98.7 0 233 3 11 87 MCQ3949889.1 GxxExxY protein [Planctomycetota bacterium] diamond 231 81.6 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
27692843 27692843 PRJNA454503_P_NODE_30124_length_239_cov_1.460674_g29795_i0 PRJNA454503 30124 239 1.460674 3.49101086 Pseudomonadati 3379134 Bacteria Bacteria 60.1 2.67e-8   NR HSW45649.1 2026778 g29795 i0 42.3 2.04602510460251 78 45 97.9 0 4 237 291 368 HSW45649.1 fused MFS/spermidine synthase [Phycisphaerae bacterium] diamond 489 60.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae       Phycisphaerae bacterium
27834164 27834164 PRJNA454503_P_NODE_71244_length_206_cov_0.896552_g70915_i0 PRJNA454503 71244 206 0.896552 1.84689712 Planctomycetota bacterium 2026780 Bacteria Bacteria 114 9.29e-28   NR HZN40691.1 2026780 g70915 i0 70.6 0.990291262135922 68 20 99 0 205 2 190 257 HZN40691.1 lipase maturation factor family protein [Planctomycetota bacterium] diamond 204 114 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
29602066 29602066 PRJNA454503_P_NODE_83090_length_203_cov_0.915493_g82761_i0 PRJNA454503 83090 203 0.915493 1.85845079 Pirellulales bacterium 2715253 Bacteria Bacteria 76.3 3.41e-14   NR HEX7377752.1 2715253 g82761 i0 62.3 5.60098522167488 53 20 78.3 0 43 201 1031 1083 HEX7377752.1 DUF1553 domain-containing protein [Pirellulales bacterium] diamond 1137 76.3 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales     Pirellulales bacterium
29871238 29871238 PRJNA454503_P_NODE_76711_length_204_cov_1.818182_g76382_i0 PRJNA454503 76711 204 1.818182 3.70909128 Bacteria 2 Bacteria Bacteria 63.2 1.12e-9   NR HEY4234941.1 2691534 g76382 i0 58.5 2.17647058823529 53 22 77.9 0 191 33 264 316 HEY4234941.1 LysR family transcriptional regulator [Lacipirellulaceae bacterium] diamond 444 63.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Lacipirellulaceae   Lacipirellulaceae bacterium
30360984 30360984 PRJNA454503_P_NODE_76532_length_204_cov_2.321678_g76203_i0 PRJNA454503 76532 204 2.321678 4.73622312 Isosphaeraceae bacterium 2691532 Bacteria Bacteria 56.2 4.02e-7   NR MFO0891795.1 2691532 g76203 i0 50 0.911764705882353 62 30 89.7 1 7 189 103 164 MFO0891795.1 hypothetical protein [Isosphaeraceae bacterium] diamond 186 56.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae   Isosphaeraceae bacterium
30486992 30486992 PRJNA454503_P_NODE_71833_length_206_cov_0.896552_g71504_i0 PRJNA454503 71833 206 0.896552 1.84689712 Planctomicrobium piriforme 1576369 Bacteria Bacteria 97.1 1.7400000000000003e-21   NR WP_217647021.1 1576369 g71504 i0 71.6 0.975728155339806 67 19 97.6 0 3 203 483 549 WP_217647021.1 sigma-54 interaction domain-containing protein [Planctomicrobium piriforme] diamond 201 97.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctomicrobium Planctomicrobium piriforme
30613143 30613143 PRJNA454503_P_NODE_84293_length_202_cov_0.992908_g83964_i0 PRJNA454503 84293 202 0.992908 2.00567416 Planctomycetota bacterium 2026780 Bacteria Bacteria 42.4 0.0305   NR MEN9554679.1 2026780 g83964 i0 43.2 0.54950495049505 37 21 55 0 126 16 403 439 MEN9554679.1 hypothetical protein [Planctomycetota bacterium] diamond 111 42.4 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
30739614 30739614 PRJNA454503_P_NODE_64674_length_208_cov_0.884354_g64345_i0 PRJNA454503 64674 208 0.884354 1.83945632 Pirellulaceae bacterium 2699754 Bacteria Bacteria 59.7 2.25e-8   NR HTN75068.1 2699754 g64345 i0 43.5 0.995192307692308 69 37 96.6 1 7 207 148 216 HTN75068.1 PDZ domain-containing protein [Pirellulaceae bacterium] diamond 207 59.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae   Pirellulaceae bacterium
31118540 31118540 PRJNA454503_P_NODE_35655_length_232_cov_1.520468_g35326_i0 PRJNA454503 35655 232 1.520468 3.52748576 Tepidisphaeraceae bacterium 2876886 Bacteria Bacteria 104 8.35e-25   NR MFT3788878.1 2876886 g35326 i0 71.4 0.905172413793103 70 20 90.5 0 22 231 177 246 MFT3788878.1 D-cysteine desulfhydrase family protein [Tepidisphaeraceae bacterium] diamond 210 104 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Tepidisphaerales Tepidisphaeraceae   Tepidisphaeraceae bacterium
31814553 31814553 PRJNA454503_P_NODE_86177_length_202_cov_0.921986_g85848_i0 PRJNA454503 86177 202 0.921986 1.86241172 Gemmataceae bacterium 2052164 Bacteria Bacteria 75.5 6.29e-14   NR MCC6417184.1 2052164 g85848 i0 56.5 1.8415841584158399 62 27 92.1 0 16 201 503 564 MCC6417184.1 hypothetical protein [Gemmataceae bacterium] diamond 372 75.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
32162724 32162724 PRJNA454503_P_NODE_53358_length_212_cov_1.543046_g53029_i0 PRJNA454503 53358 212 1.543046 3.27125752 Planctomycetota bacterium 2026780 Bacteria Bacteria 63.9 6.62e-10   NR MBL8756555.1 2026780 g53029 i0 46.5 1.00471698113208 71 37 99.1 1 210 1 180 250 MBL8756555.1 hypothetical protein [Planctomycetota bacterium] diamond 213 63.9 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32415848 32415848 PRJNA454503_P_NODE_84399_length_202_cov_0.921986_g84070_i0 PRJNA454503 84399 202 0.921986 1.86241172 Planctomycetota bacterium 2026780 Bacteria Bacteria 107 2e-25   NR MBN8643638.1 2026780 g84070 i0 77.8 0.935643564356436 63 14 93.6 0 190 2 361 423 MBN8643638.1 hypothetical protein [Planctomycetota bacterium] diamond 189 107 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32574155 32574155 PRJNA454503_P_NODE_47219_length_218_cov_2.242038_g46890_i0 PRJNA454503 47219 218 2.242038 4.88764284 Botrimarina mediterranea 2528022 Bacteria Bacteria 120 2.8e-31   NR WP_145116333.1 2528022 g46890 i0 81.9 0.990825688073395 72 13 99.1 0 218 3 195 266 WP_145116333.1 hypothetical protein [Botrimarina mediterranea] diamond 216 120 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Lacipirellulaceae Botrimarina Botrimarina mediterranea

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;