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contig_metadata

20 rows where bioproject = "PRJNA454503", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 20 ✖

tax_phylum 1

  • Myxococcota · 20 ✖

tax_kingdom 1

bioproject 1

  • PRJNA454503 · 20 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8095092 8095092 PRJNA454503_P_NODE_10967_length_339_cov_2.151079_g10638_i0 PRJNA454503 10967 339 2.151079 7.29215781 Pendulispora brunnea 2905690 Bacteria Bacteria 134 1.11e-26   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g10638 i0 74.847 9.07079646017699 326 67 94 14 23 339 10988228 10987909 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 3075 134 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea
13847192 13847192 PRJNA454503_P_NODE_27511_length_242_cov_84.624309_g27182_i0 PRJNA454503 27511 242 84.624309 204.79082778 Pseudomonadati 3379134 Bacteria Bacteria 436 5.1499999999999985e-118   NTclustered gi|28395338|gb|AY190663.1| 56 g27182 i0 99.174 611.012396694215 242 2 100 0 1 242 664 905 Polyangium cellulosum strain So9881 clone 2 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 147865 436 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
18294036 18294036 PRJNA454503_P_NODE_375_length_1722_cov_12.786875_g244_i0 PRJNA454503 375 1722 12.786875 220.1899875 Pendulispora albinea 2741071 Bacteria Bacteria 2170 0   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g244 i0 89.504 145.381533101045 1734 157 100 19 1 1722 7190399 7192119 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 250347 2170 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
18294356 18294356 PRJNA454503_P_NODE_65155_length_208_cov_0.884354_g64826_i0 PRJNA454503 65155 208 0.884354 1.83945632 Myxococcota bacterium 2818507 Bacteria Bacteria 110 5.72e-28   NR MEZ0312461.1 2818507 g64826 i0 91.5 0.850961538461538 59 5 85.1 0 31 207 4 62 MEZ0312461.1 TetR/AcrR family transcriptional regulator [Myxococcota bacterium] diamond 177 110 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
22119043 22119043 PRJNA454503_P_NODE_47438_length_218_cov_1.656051_g47109_i0 PRJNA454503 47438 218 1.656051 3.61019118 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 136 2.9199999999999996e-35   NR MBA2540744.1 2026735 g47109 i0 97.2 1.98165137614679 72 2 99.1 0 218 3 233 304 MBA2540744.1 response regulator [Deltaproteobacteria bacterium] diamond 432 136 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
22119147 22119147 PRJNA454503_P_NODE_55098_length_211_cov_0.866667_g54769_i0 PRJNA454503 55098 211 0.866667 1.82866737 Corallococcus exercitus 2316736 Bacteria Bacteria 145 2.97e-30   NTclustered gi|2809270164|gb|CP102577.1| 2316736 g54769 i0 79.524 5.54976303317536 210 37 98 6 2 208 6531739 6531533 Corallococcus exercitus strain SDU142 chromosome, complete genome blastn 1171 145 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus exercitus
23394841 23394841 PRJNA454503_P_NODE_56919_length_210_cov_1.892617_g56590_i0 PRJNA454503 56919 210 1.892617 3.9744957 Anaeromyxobacter sp. K 447217 Bacteria Bacteria 172 1.36e-38   NTclustered gi|196170270|gb|CP001131.1| 447217 g56590 i0 84.181 9.27619047619048 177 28 84 0 4 180 2511314 2511490 Anaeromyxobacter sp. K, complete genome blastn 1948 172 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp. K
24668759 24668759 PRJNA454503_P_NODE_54680_length_211_cov_0.866667_g54351_i0 PRJNA454503 54680 211 0.866667 1.82866737 Labilithrix luteola 1391654 Bacteria Bacteria 257 3.66e-64   NTclustered gi|913610804|gb|CP012333.1| 1391654 g54351 i0 88.679 391.668246445498 212 23 100 1 1 211 7089187 7088976 Labilithrix luteola strain DSM 27648, complete genome blastn 82642 257 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
26727537 26727537 PRJNA454503_P_NODE_69521_length_207_cov_0.890411_g69192_i0 PRJNA454503 69521 207 0.890411 1.84315077 Kofleriaceae bacterium 2212474 Bacteria Bacteria 56.6 1.84e-8   NR HEY3803016.1 2212474 g69192 i0 80.6 0.521739130434783 36 7 52.2 0 99 206 4 39 HEY3803016.1 hypothetical protein [Kofleriaceae bacterium] diamond 108 56.6 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
27138962 27138962 PRJNA454503_P_NODE_36962_length_230_cov_1.988166_g36633_i0 PRJNA454503 36962 230 1.988166 4.5727818 Myxococcota bacterium 2818507 Bacteria Bacteria 92.8 5.37e-20   NR HMV70023.1 2818507 g36633 i0 70.5 2.81739130434783 61 18 79.6 0 205 23 26 86 HMV70023.1 MopE-related protein [Myxococcota bacterium] diamond 648 92.8 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
27486952 27486952 PRJNA454503_P_NODE_52503_length_213_cov_1.296053_g52174_i0 PRJNA454503 52503 213 1.296053 2.76059289 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 88.6 1.8e-18   NR MDO8527159.1 2026735 g52174 i0 60 2.87323943661972 70 27 97.2 1 2 208 240 309 MDO8527159.1 DUF1156 domain-containing protein [Deltaproteobacteria bacterium] diamond 612 88.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28212874 28212874 PRJNA454503_P_NODE_34986_length_233_cov_1.377907_g34657_i0 PRJNA454503 34986 233 1.377907 3.21052331 Kofleriaceae bacterium 2212474 Bacteria Bacteria 81.3 1.5e-16   NR HVV86035.1 2212474 g34657 i0 65.6 0.785407725321888 61 21 78.5 0 197 15 15 75 HVV86035.1 hypothetical protein [Kofleriaceae bacterium] diamond 183 81.3 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
30455638 30455638 PRJNA454503_P_NODE_35833_length_232_cov_1.298246_g35504_i0 PRJNA454503 35833 232 1.298246 3.01193072 Polyangia bacterium 3058050 Bacteria Bacteria 115 1.09e-27   NR HMF41143.1 3058050 g35504 i0 81.6 0.982758620689655 76 14 98.3 0 231 4 11 86 HMF41143.1 tetratricopeptide repeat protein [Polyangia bacterium] diamond 228 115 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
30549985 30549985 PRJNA454503_P_NODE_32453_length_236_cov_1.485714_g32124_i0 PRJNA454503 32453 236 1.485714 3.50628504 Labilithrix sp. 1971228 Bacteria Bacteria 91.7 1.48e-19   NR MDB4937664.1 1971228 g32124 i0 66.7 4.70338983050847 78 21 92.8 1 229 11 29 106 MDB4937664.1 Flagellar hook-length control protein FliK [Labilithrix sp.] diamond 1110 91.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
31181665 31181665 PRJNA454503_P_NODE_49435_length_216_cov_1.677419_g49106_i0 PRJNA454503 49435 216 1.677419 3.62322504 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 90.9 1.68e-19   NR MBA3457857.1 2026735 g49106 i0 70 1.95833333333333 70 21 97.2 0 215 6 319 388 MBA3457857.1 lamin tail domain-containing protein [Deltaproteobacteria bacterium] diamond 423 90.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31245155 31245155 PRJNA454503_P_NODE_38475_length_229_cov_0.976190_g38146_i0 PRJNA454503 38475 229 0.97619 2.2354751 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.5 0.0162   NR MBI3079629.1 2026735 g38146 i0 37.8 1.91266375545852 45 27 59 1 54 188 81 124 MBI3079629.1 hydantoinase B/oxoprolinase family protein [Deltaproteobacteria bacterium] diamond 438 43.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31276709 31276709 PRJNA454503_P_NODE_37775_length_229_cov_1.970238_g37446_i0 PRJNA454503 37775 229 1.970238 4.51184502 Myxococcota bacterium 2818507 Bacteria Bacteria 65.1 7.21e-11   NR HET6345509.1 2818507 g37446 i0 55.9 0.890829694323144 68 30 89.1 0 24 227 36 103 HET6345509.1 type II secretion system protein GspM [Myxococcota bacterium] diamond 204 65.1 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
31434894 31434894 PRJNA454503_P_NODE_38076_length_229_cov_1.547619_g37747_i0 PRJNA454503 38076 229 1.547619 3.54404751 Kofleriaceae bacterium 2212474 Bacteria Bacteria 119 1.59e-29   NR HEX5058701.1 2212474 g37747 i0 75.3 0.956331877729258 73 18 95.6 0 1 219 420 492 HEX5058701.1 hypothetical protein [Kofleriaceae bacterium] diamond 219 119 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
32194291 32194291 PRJNA454503_P_NODE_43098_length_223_cov_1.604938_g42769_i0 PRJNA454503 43098 223 1.604938 3.57901174 Myxococcales bacterium 2026763 Bacteria Bacteria 58.5 6.41e-8   NR MCA9594328.1 2026763 g42769 i0 64.9 0.901345291479821 37 13 49.8 0 113 223 1 37 MCA9594328.1 4-hydroxy-tetrahydrodipicolinate synthase [Myxococcales bacterium] diamond 201 58.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32321118 32321118 PRJNA454503_P_NODE_82659_length_203_cov_0.915493_g82330_i0 PRJNA454503 82659 203 0.915493 1.85845079 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 108 1.43e-27   NR MBA2542933.1 2026735 g82330 i0 74.6 0.990147783251232 67 17 99 0 3 203 41 107 MBA2542933.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 201 108 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;