RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA454503", tax_phylum = "Methanobacteriota" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA454503 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5546357 5546357 PRJNA454503_P_NODE_59425_length_210_cov_0.872483_g59096_i0 PRJNA454503 59425 210 0.872483 1.8322143 Natronomonas marina 2961939 Archaea Archaea 204 4.8099999999999994e-48   NTclustered gi|2273574514|gb|CP101154.1| 2961939 g59096 i0 84.211 9.75714285714286 209 33 99 0 1 209 35869 36077 Natronomonas marina strain ZY43 chromosome, complete genome blastn 2049 204 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas marina
9370179 9370179 PRJNA454503_P_NODE_34008_length_234_cov_1.502890_g33679_i0 PRJNA454503 34008 234 1.50289 3.5167626 Halorubrum lacusprofundi 2247 Archaea Archaea 355 1.43e-93   NTclustered gi|222451341|gb|CP001365.1| 416348 g33679 i0 94.017 87.9871794871795 234 14 100 0 1 234 1607464 1607697 Halorubrum lacusprofundi ATCC 49239 chromosome 1, complete sequence blastn 20589 355 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum lacusprofundi
28970962 28970962 PRJNA454503_P_NODE_14248_length_304_cov_2.366255_g13919_i0 PRJNA454503 14248 304 2.366255 7.1934152 Methanoregulaceae archaeon 2485498 Archaea Archaea 44.7 0.0145   NR HNO08674.1 2485498 g13919 i0 33.8 0.671052631578947 68 45 67.1 0 239 36 129 196 HNO08674.1 PKD domain-containing protein [Methanoregulaceae archaeon] diamond 204 44.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae   Methanoregulaceae archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;