RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA454503" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA454503 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13196043 13196043 PRJNA454503_P_NODE_4311_length_562_cov_1713.045908_g3995_i0 PRJNA454503 4311 562 1713.045908 9627.31800296 Amorphochlora amoebiformis 1561963 SAR_Eukaryotes SAR_Eukaryotes 73.1 4.25e-8   NTclustered gi|893150443|dbj|AB996604.1| 1561963 g3995 i0 80.18 9.47508896797153 111 10 19 11 455 562 766 867 Amorphochlora amoebiformis nucleomorph DNA, chromosome: 3, complete sequence, strain: CCMP2058 blastn 5325 73.1 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Amorphochlora Amorphochlora amoebiformis
16396496 16396496 PRJNA454503_P_NODE_88893_length_193_cov_2.007576_g88564_i0 PRJNA454503 88893 193 2.007576 3.87462168 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 115 2.09e-21   NTclustered gi|88792585|gb|DQ386166.1| 1979842 g88564 i0 83.607 44.9481865284974 122 20 63 0 60 181 1542 1421 Dimorpha-like sp. ATCC 50522 28S ribosomal RNA gene, partial sequence blastn 8675 115 1 Eukaryota Sar   Cercozoa     Mesofilidae Mesofila Mesofila limnetica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;