RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA454503" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA454503 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14471616 14471616 PRJNA454503_P_NODE_8672_length_379_cov_3.779874_g8343_i0 PRJNA454503 8672 379 3.779874 14.32572246 Bacillariaceae sp. 3061772 SAR_Eukaryotes SAR_Eukaryotes 170 4.18e-51   NR KAL3922769.1 3061772 g8343 i0 76.4 5.75461741424802 123 24 96.6 2 378 13 78 196 KAL3922769.1 MAG: hypothetical protein SGILL_002026 [Bacillariaceae sp.] diamond 2181 170 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae   Bacillariaceae sp.
27123639 27123639 PRJNA454503_P_NODE_64402_length_208_cov_0.884354_g64073_i0 PRJNA454503 64402 208 0.884354 1.83945632 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 105 1.4699999999999999e-24   NR XP_002289000.1 296543 g64073 i0 70.1 5.72596153846154 67 20 96.6 0 4 204 389 455 XP_002289000.1 probable aspartyl aminopeptidase, partial [Thalassiosira pseudonana CCMP1335] diamond 1191 105 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
32321114 32321114 PRJNA454503_P_NODE_58639_length_210_cov_0.872483_g58310_i0 PRJNA454503 58639 210 0.872483 1.8322143 Mayamaea pseudoterrestris 2872254 SAR_Eukaryotes SAR_Eukaryotes 63.2 1.56e-9   NR GKY91022.1 2872254 g58310 i0 52.4 0.9 63 27 87.1 2 210 28 725 786 GKY91022.1 hypothetical protein MPSEU_000075000 [Mayamaea pseudoterrestris] diamond 189 63.2 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Mayamaea Mayamaea pseudoterrestris
32904799 32904799 PRJNA454503_P_NODE_28860_length_241_cov_1.288889_g28531_i0 PRJNA454503 28860 241 1.288889 3.10622249 Coscinodiscophyceae 33836 SAR_Eukaryotes SAR_Eukaryotes 55.5 1.19e-6   NR KAL3780328.1 29204 g28531 i0 37.3 4.30705394190871 59 37 73.4 0 203 27 1467 1525 KAL3780328.1 hypothetical protein HJC23_008258 [Cyclotella cryptica] diamond 1038 55.8 0.99462365591397806 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;