RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA454503" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA454503 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11921425 11921425 PRJNA454503_P_NODE_60650_length_209_cov_1.358108_g60321_i0 PRJNA454503 60650 209 1.358108 2.83844572 Cryptosporidium ryanae 515981 SAR_Eukaryotes SAR_Eukaryotes 228 2.8399999999999995e-55   NTclustered gi|2787713874|ref|XM_067342015.1| 515981 g60321 i0 86.603 142.272727272727 209 24 99 3 1 207 235 441 Cryptosporidium ryanae polyubiquitin-C-like (FG386_002800), partial mRNA blastn 29735 228 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium ryanae
14471603 14471603 PRJNA454503_P_NODE_85352_length_202_cov_0.921986_g85023_i0 PRJNA454503 85352 202 0.921986 1.86241172 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 99.4 1.36e-22   NR AAC47173.1 5803 g85023 i0 72.7 15.1782178217822 66 18 98 0 198 1 356 421 AAC47173.1 heat shock protein 90, partial [Eimeria bovis] diamond 3066 100 0.994 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria bovis
23394459 23394459 PRJNA454503_P_NODE_29559_length_240_cov_1.452514_g29230_i0 PRJNA454503 29559 240 1.452514 3.4860336 Cryptosporidium muris 5808 SAR_Eukaryotes SAR_Eukaryotes 411 3.089999999999999e-110   NTclustered gi|209883090|ref|XM_002142934.1| 441375 g29230 i0 97.5 2.62083333333333 240 6 100 0 1 240 378 139 Cryptosporidium muris RN66 uncharacterized protein (CMU_002460), partial mRNA blastn 629 411 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium muris
23394845 23394845 PRJNA454503_P_NODE_57139_length_210_cov_1.744966_g56810_i0 PRJNA454503 57139 210 1.744966 3.6644286 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 267 6.05e-67   NTclustered gi|820695469|tpe|LN714488.1| 572307 g56810 i0 89.623 2.03809523809524 212 18 100 4 1 210 80552 80343 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 428 267 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;