RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA454503", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA454503 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2993532 2993532 PRJNA454503_P_NODE_78103_length_204_cov_0.909091_g77774_i0 PRJNA454503 78103 204 0.909091 1.85454564 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 115 2.2400000000000003e-21   NTclustered gi|1752404478|ref|XM_030974615.1| 7668 g77774 i0 81.25 4.18627450980392 144 26 70 1 14 156 283 140 PREDICTED: Strongylocentrotus purpuratus 60S acidic ribosomal protein P0 (LOC100888621), mRNA blastn 854 115 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
18294547 18294547 PRJNA454503_P_NODE_82535_length_203_cov_0.915493_g82206_i0 PRJNA454503 82535 203 0.915493 1.85845079 Anneissia japonica 1529436 Echinodermata other_Eukaryota 215 2.13e-51   NTclustered gi|1826650091|ref|XM_033257018.1| 1529436 g82206 i0 87.047 43.9901477832512 193 21 94 4 13 203 4567 4377 PREDICTED: Anneissia japonica tubulin alpha-1A chain-like (LOC117113619), transcript variant X2, mRNA blastn 8930 215 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;