RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA454503", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA454503 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13847073 13847073 PRJNA454503_P_NODE_15931_length_291_cov_1.673913_g15602_i0 PRJNA454503 15931 291 1.673913 4.87108683 Spiroplasma 2132 Bacteria Bacteria 56.5 0.002   NTclustered gi|1084378657|gb|CP017658.1| 1898044 g15602 i0 86.538 0.357388316151203 52 6 18 1 74 125 644049 644099 Spiroplasma sp. TU-14 chromosome, complete genome blastn 104 56.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma sp. TU-14
18294186 18294186 PRJNA454503_P_NODE_50535_length_215_cov_1.519481_g50206_i0 PRJNA454503 50535 215 1.519481 3.26688415 uncultured Mollicutes bacterium 220137 Bacteria Bacteria 392 9.83e-105   NTclustered gi|2187163481|emb|OV788639.1| 220137 g50206 i0 99.535 1 215 1 100 0 1 215 951432 951646 uncultured Mollicutes bacterium isolate min17_bin64 genome assembly, chromosome: 1 blastn 215 392 1 Bacteria   Bacillati Mycoplasmatota Mollicutes       uncultured Mollicutes bacterium
18944926 18944926 PRJNA454503_P_NODE_10375_length_348_cov_1.358885_g10046_i0 PRJNA454503 10375 348 1.358885 4.7289198 Mycoplasma 2093 Bacteria Bacteria 78.7 5.44e-10   NTclustered gi|526641973|ref|NR_103970.1| 57372 g10046 i0 90.323 19.5344827586207 62 3 17 3 183 241 549 488 Mycoplasma suis strain Illinois 23S ribosomal RNA gene, complete sequence blastn 6798 78.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma suis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;