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contig_metadata

25 rows where bioproject = "PRJNA454503", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 25 ✖

tax_clade 1

  • Sar · 25 ✖

bioproject 1

  • PRJNA454503 · 25 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2992923 2992923 PRJNA454503_P_NODE_2903_length_704_cov_4.617418_g2609_i0 PRJNA454503 2903 704 4.617418 32.50662272 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 1205 0   NTclustered gi|33520250|gb|AY273995.1| 92964 g2609 i0 97.589 100.026988636364 705 13 100 4 1 704 716 15 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 70419 1205 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
4269855 4269855 PRJNA454503_P_NODE_78364_length_204_cov_0.909091_g78035_i0 PRJNA454503 78364 204 0.909091 1.85454564 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 141 3.69e-29   NTclustered gi|675204844|ref|XM_008913059.1| 761204 g78035 i0 84.932 1.40686274509804 146 15 72 4 2 147 537 675 Phytophthora parasitica INRA-310 ribosomal protein S4 mRNA blastn 287 141 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
8095358 8095358 PRJNA454503_P_NODE_26747_length_244_cov_2.114754_g26418_i0 PRJNA454503 26747 244 2.114754 5.15999976 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 117 7.6900000000000005e-22   NTclustered gi|189084883|gb|BT032414.1| 4784 g26418 i0 83.594 0.524590163934426 128 17 51 2 3 127 671 797 Phytophthora capsici clone CBOU93-B03 mRNA sequence blastn 128 117 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
8095933 8095933 PRJNA454503_P_NODE_7247_length_418_cov_1.792717_g6918_i0 PRJNA454503 7247 418 1.792717 7.49355706 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 181 1.4599999999999997e-52   NR XP_067822856.1 4779 g6918 i0 72.9 16.9377990430622 140 37 99.8 1 2 418 2 141 XP_067822856.1 hypothetical protein CCR75_007112 [Bremia lactucae] diamond 7080 182 0.994505494505495 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
8746597 8746597 PRJNA454503_P_NODE_26467_length_245_cov_1.413043_g26138_i0 PRJNA454503 26467 245 1.413043 3.46195535 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 278 3.35e-70   NTclustered gi|695412177|ref|XM_009527379.1| 67593 g26138 i0 87.243 7.08163265306122 243 31 99 0 1 243 260 18 Phytophthora sojae hypothetical protein mRNA blastn 1735 278 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
10021834 10021834 PRJNA454503_P_NODE_26028_length_246_cov_3.178378_g25699_i0 PRJNA454503 26028 246 3.178378 7.81880988 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 220 5.76e-53   NTclustered gi|813144478|ref|XM_012344373.1| 695850 g25699 i0 87.435 10.1260162601626 191 24 78 0 1 191 489 679 Saprolegnia parasitica CBS 223.65 60S ribosomal protein mRNA blastn 2491 220 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
14470664 14470664 PRJNA454503_P_NODE_12752_length_318_cov_1.494163_g12423_i0 PRJNA454503 12752 318 1.494163 4.75143834 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 167 1.02e-36   NTclustered gi|813118806|ref|XM_012340678.1| 695850 g12423 i0 90.476 1.16037735849057 126 12 40 0 193 318 354 229 Saprolegnia parasitica CBS 223.65 50S ribosomal protein L36e mRNA blastn 369 167 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
17019385 17019385 PRJNA454503_P_NODE_16374_length_288_cov_2.035242_g16045_i0 PRJNA454503 16374 288 2.035242 5.86149696 Pythium sp. AP 378252 SAR_Eukaryotes SAR_Eukaryotes 442 1.3499999999999993e-119   NTclustered gi|90855438|dbj|AB254193.1| 378252 g16045 i0 95.956 71.6666666666667 272 11 94 0 17 288 1 272 Pythium sp. AP genes for 28S rRNA, IGS, 5S rRNA, partial and complete sequence, strain: AP-1, AP-2 and AP-3 blastn 20640 442 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium sp. AP
17019963 17019963 PRJNA454503_P_NODE_54794_length_211_cov_0.866667_g54465_i0 PRJNA454503 54794 211 0.866667 1.82866737 Viridiplantae 33090 SAR_Eukaryotes SAR_Eukaryotes 72.8 1.01e-14   NR KAG3138711.1 53986 g54465 i0 67.3 5.23222748815166 52 16 73.9 1 159 4 5 55 KAG3138711.1 hypothetical protein PI126_g16794 [Phytophthora idaei] diamond 1104 73.2 0.994535519125683 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora idaei
19568656 19568656 PRJNA454503_P_NODE_796_length_1287_cov_15.225122_g605_i0 PRJNA454503 796 1287 15.225122 195.94732014 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 2244 0   NTclustered gi|937408816|ref|NC_027966.1| 114742 g605 i0 98.135 103.869463869464 1287 24 100 0 1 1287 11293 10007 Pythium insidiosum mitochondrial DNA, complete genome blastn 133680 2244 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
20844347 20844347 PRJNA454503_P_NODE_59477_length_210_cov_0.872483_g59148_i0 PRJNA454503 59477 210 0.872483 1.8322143 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 112 6.39e-27   NR KAF0741867.1 100861 g59148 i0 77.9 6.8 68 15 97.1 0 209 6 331 398 KAF0741867.1 hypothetical protein Ae201684_003058 [Aphanomyces euteiches] diamond 1428 112 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
20844574 20844574 PRJNA454503_P_NODE_81317_length_203_cov_0.915493_g80988_i0 PRJNA454503 81317 203 0.915493 1.85845079 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 272 1.25e-68   NTclustered gi|695405971|ref|XM_009525682.1| 67593 g80988 i0 92.593 78.7241379310345 189 14 93 0 13 201 446 258 Phytophthora sojae hypothetical protein mRNA blastn 15981 272 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
20844667 20844667 PRJNA454503_P_NODE_89477_length_190_cov_3.023256_g89148_i0 PRJNA454503 89477 190 3.023256 5.7441864 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 351 1.4399999999999997e-92   NTclustered gi|338798212|gb|HQ665273.1| 114742 g89148 i0 100 100.147368421053 190 0 100 0 1 190 801 990 Pythium insidiosum isolate CBS 574.85 28S large subunit ribosomal RNA gene, partial sequence blastn 19028 351 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
23395076 23395076 PRJNA454503_P_NODE_7759_length_404_cov_1.137026_g7430_i0 PRJNA454503 7759 404 1.137026 4.59358504 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 198 4.7e-46   NTclustered gi|695460914|ref|XM_009539807.1| 67593 g7430 i0 91.608 35.7772277227723 143 12 35 0 1 143 212 354 Phytophthora sojae hypothetical protein mRNA blastn 14454 198 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
27138958 27138958 PRJNA454503_P_NODE_23482_length_255_cov_1.335052_g23153_i0 PRJNA454503 23482 255 1.335052 3.4043826 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 89 2.14e-18   NR RLO03635.1 112090 g23153 i0 59.3 6.07058823529412 86 31 98.8 2 254 3 405 488 RLO03635.1 hypothetical protein DYB28_007879, partial [Aphanomyces astaci] diamond 1548 89 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
28055137 28055137 PRJNA454503_P_NODE_62325_length_209_cov_0.878378_g61996_i0 PRJNA454503 62325 209 0.878378 1.83581002 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 72.4 8.19e-13   NR OQR90288.1 1202772 g61996 i0 66.7 0.688995215311005 48 16 68.9 0 59 202 378 425 OQR90288.1 cyclin-dependent kinase [Achlya hypogyna] diamond 144 72.4 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
28513505 28513505 PRJNA454503_P_NODE_79127_length_204_cov_0.909091_g78798_i0 PRJNA454503 79127 204 0.909091 1.85454564 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 56.6 2.25e-7   NR KAH9101306.1 100861 g78798 i0 50 2 68 31 95.6 3 203 9 40 107 KAH9101306.1 hypothetical protein LEN26_015734 [Aphanomyces euteiches] diamond 408 57 0.992982456140351 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
29492255 29492255 PRJNA454503_P_NODE_74730_length_205_cov_0.902778_g74401_i0 PRJNA454503 74730 205 0.902778 1.8506949 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 53.5 3.42e-6   NR KAF1773501.1 29920 g74401 i0 39.4 5.76585365853659 66 40 96.6 0 3 200 172 237 KAF1773501.1 Eukaryotic porin/Tom40 [Phytophthora cactorum] diamond 1182 53.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
29918329 29918329 PRJNA454503_P_NODE_56571_length_211_cov_0.866667_g56242_i0 PRJNA454503 56571 211 0.866667 1.82866737 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 107 4.28e-25   NR KAJ0407353.1 114742 g56242 i0 100 0.725118483412322 51 0 72.5 0 211 59 1802 1852 KAJ0407353.1 hypothetical protein P43SY_004781 [Pythium insidiosum] diamond 153 107 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
30076025 30076025 PRJNA454503_P_NODE_15412_length_295_cov_1.666667_g15083_i0 PRJNA454503 15412 295 1.666667 4.91666765 Phytophthora capsici 4784 SAR_Eukaryotes SAR_Eukaryotes 60.5 3.96e-8   NR KAG1709295.1 4784 g15083 i0 61.5 2.11525423728814 52 16 52.9 1 3 158 659 706 KAG1709295.1 hypothetical protein DVH05_019938 [Phytophthora capsici] diamond 624 60.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
30865953 30865953 PRJNA454503_P_NODE_68014_length_207_cov_0.890411_g67685_i0 PRJNA454503 68014 207 0.890411 1.84315077 Saprolegnia diclina VS2 112098 SAR_Eukaryotes SAR_Eukaryotes 59.7 2.48e-8   NR XP_008618430.1 1156394 g67685 i0 42 1 69 40 100 0 207 1 566 634 XP_008618430.1 hypothetical protein SDRG_14101 [Saprolegnia diclina VS20] diamond 207 59.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
31909462 31909462 PRJNA454503_P_NODE_56537_length_211_cov_0.866667_g56208_i0 PRJNA454503 56537 211 0.866667 1.82866737 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 139 2.64e-36   NR KAJ0409454.1 114742 g56208 i0 100 1.99052132701422 70 0 99.5 0 1 210 1090 1159 KAJ0409454.1 hypothetical protein P43SY_002344 [Pythium insidiosum] diamond 420 139 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
32004418 32004418 PRJNA454503_P_NODE_35978_length_232_cov_1.081871_g35649_i0 PRJNA454503 35978 232 1.081871 2.50994072 Thraustotheca clavata 74557 SAR_Eukaryotes SAR_Eukaryotes 70.1 7.62e-12   NR OQS03481.1 74557 g35649 i0 45.5 1.99137931034483 77 38 99.6 2 231 1 444 516 OQS03481.1 urease, partial [Thraustotheca clavata] diamond 462 70.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
32479194 32479194 PRJNA454503_P_NODE_19959_length_269_cov_0.937500_g19630_i0 PRJNA454503 19959 269 0.9375 2.521875 Peronosclerospora sorghi 230839 SAR_Eukaryotes SAR_Eukaryotes 69.3 2.69e-13   NR KAI9908711.1 230839 g19630 i0 51.6 0.713754646840149 64 31 71.4 0 231 40 3 66 KAI9908711.1 hypothetical protein PsorP6_004016 [Peronosclerospora sorghi] diamond 192 69.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronosclerospora Peronosclerospora sorghi
32542507 32542507 PRJNA454503_P_NODE_13199_length_314_cov_1.023715_g12870_i0 PRJNA454503 13199 314 1.023715 3.2144651 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 54.7 5.56e-7   NR TYZ62469.1 1485010 g12870 i0 41.1 0.697452229299363 73 34 69.7 2 252 34 44 107 TYZ62469.1 hypothetical protein PybrP1_005590 [[Pythium] brassicae (nom. inval.)] diamond 219 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;