contig_metadata
14 rows where bioproject = "PRJNA454503", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6819723 | 6819723 | PRJNA454503_P_NODE_14106_length_306_cov_1.053061_g13777_i0 | PRJNA454503 | 14106 | 306 | 1.053061 | 3.22236666 | Prosthecobacter dejongeii | 48465 | Bacteria | Bacteria | 473 | 5.139999999999999e-129 | NTclustered | gi|183579826|emb|AM905423.1| | 48465 | g13777 | i0 | 96.516 | 265.493464052288 | 287 | 8 | 94 | 2 | 1 | 287 | 1768 | 1484 | Prosthecobacter dejongeii partial 23S rRNA gene, strain DSM12251 | blastn | 81241 | 473 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter dejongeii | |
| 8095894 | 8095894 | PRJNA454503_P_NODE_69447_length_207_cov_0.890411_g69118_i0 | PRJNA454503 | 69447 | 207 | 0.890411 | 1.84315077 | Oleiharenicola sp. Vm1 | 3398393 | Bacteria | Bacteria | 56.5 | 0.001 | NTclustered | gi|2912653302|gb|CP180537.1| | 3398393 | g69118 | i0 | 100 | 0.144927536231884 | 30 | 0 | 14 | 0 | 110 | 139 | 1644999 | 1644970 | Oleiharenicola sp. Vm1 chromosome, complete genome | blastn | 30 | 56.5 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Oleiharenicola | Oleiharenicola sp. Vm1 | |
| 8746536 | 8746536 | PRJNA454503_P_NODE_18747_length_275_cov_1.037383_g18418_i0 | PRJNA454503 | 18747 | 275 | 1.037383 | 2.85280325 | Verrucomicrobiaceae | 203557 | Bacteria | Bacteria | 436 | 5.969999999999999e-118 | NTclustered | gi|12583975|gb|AF245379.1|AF245379 | 48466 | g18418 | i0 | 95.588 | 260.189090909091 | 272 | 12 | 99 | 0 | 4 | 275 | 2182 | 2453 | Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence | blastn | 71552 | 436 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Prosthecobacter | Prosthecobacter vanneervenii | |
| 13196508 | 13196508 | PRJNA454503_P_NODE_8171_length_392_cov_1.178248_g7842_i0 | PRJNA454503 | 8171 | 392 | 1.178248 | 4.61873216 | Verrucomicrobium spinosum | 2736 | Bacteria | Bacteria | 481 | 4.03e-131 | NTclustered | gi|12583973|gb|AF245377.1| | 240016 | g7842 | i0 | 88.974 | 237.163265306122 | 390 | 42 | 99 | 1 | 1 | 390 | 1042 | 1430 | Verrucomicrobium spinosum 23S ribosomal RNA gene, partial sequence | blastn | 92968 | 481 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Verrucomicrobium | Verrucomicrobium spinosum | |
| 16396489 | 16396489 | PRJNA454503_P_NODE_87333_length_199_cov_2.391304_g87004_i0 | PRJNA454503 | 87333 | 199 | 2.391304 | 4.75869496 | Luteolibacter flavescens | 1859460 | Bacteria | Bacteria | 117 | 1.7499999999999998e-30 | NR | WP_264503452.1 | 1859460 | g87004 | i0 | 87.9 | 2.98492462311558 | 66 | 8 | 99.5 | 0 | 1 | 198 | 4 | 69 | WP_264503452.1 ABC transporter ATP-binding protein [Luteolibacter flavescens] | diamond | 594 | 117 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter flavescens | |
| 18945123 | 18945123 | PRJNA454503_P_NODE_30275_length_239_cov_1.460674_g29946_i0 | PRJNA454503 | 30275 | 239 | 1.460674 | 3.49101086 | Chthoniobacteraceae bacterium | 2811408 | Bacteria | Bacteria | 126 | 5.64e-35 | NR | MEO6738746.1 | 2811408 | g29946 | i0 | 70.9 | 0.99163179916318 | 79 | 23 | 99.2 | 0 | 239 | 3 | 5 | 83 | MEO6738746.1 thioredoxin-dependent thiol peroxidase [Chthoniobacteraceae bacterium] | diamond | 237 | 126 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Spartobacteria | Chthoniobacterales | Chthoniobacteraceae | Chthoniobacteraceae bacterium | ||
| 29254834 | 29254834 | PRJNA454503_P_NODE_67829_length_207_cov_0.890411_g67500_i0 | PRJNA454503 | 67829 | 207 | 0.890411 | 1.84315077 | Luteolibacter arcticus | 1581411 | Bacteria | Bacteria | 53.5 | 3.18e-6 | NR | WP_264486249.1 | 1581411 | g67500 | i0 | 78.8 | 1.94202898550725 | 66 | 14 | 95.7 | 0 | 8 | 205 | 53 | 118 | WP_264486249.1 carbohydrate-binding domain-containing protein [Luteolibacter arcticus] | diamond | 402 | 53.5 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter arcticus | |
| 29539134 | 29539134 | PRJNA454503_P_NODE_29370_length_240_cov_1.452514_g29041_i0 | PRJNA454503 | 29370 | 240 | 1.452514 | 3.4860336 | Candidatus Methylacidiphilales bacterium | 2720631 | Bacteria | Bacteria | 112 | 1.02e-26 | NR | HSI85345.1 | 2720631 | g29041 | i0 | 61.5 | 1.95 | 78 | 30 | 97.5 | 0 | 239 | 6 | 281 | 358 | HSI85345.1 hypothetical protein [Candidatus Methylacidiphilales bacterium] | diamond | 468 | 112 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Methylacidiphilae | Methylacidiphilales | Candidatus Methylacidiphilales bacterium | |||
| 30360983 | 30360983 | PRJNA454503_P_NODE_75412_length_205_cov_0.902778_g75083_i0 | PRJNA454503 | 75412 | 205 | 0.902778 | 1.8506949 | Verrucomicrobiota bacterium | 2026799 | Bacteria | Bacteria | 113 | 2.56e-27 | NR | MEI6818877.1 | 2026799 | g75083 | i0 | 77.9 | 1.99024390243902 | 68 | 15 | 99.5 | 0 | 1 | 204 | 580 | 647 | MEI6818877.1 erythromycin esterase family protein [Verrucomicrobiota bacterium] | diamond | 408 | 113 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium | |||||
| 30929254 | 30929254 | PRJNA454503_P_NODE_68094_length_207_cov_0.890411_g67765_i0 | PRJNA454503 | 68094 | 207 | 0.890411 | 1.84315077 | Verrucomicrobiia bacterium | 2499141 | Bacteria | Bacteria | 84.7 | 3.85e-17 | NR | MCB1065583.1 | 2499141 | g67765 | i0 | 57.4 | 0.985507246376812 | 68 | 29 | 98.6 | 0 | 204 | 1 | 532 | 599 | MCB1065583.1 hypothetical protein [Verrucomicrobiia bacterium] | diamond | 204 | 84.7 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiia bacterium | ||||
| 31071946 | 31071946 | PRJNA454503_P_NODE_39815_length_227_cov_1.566265_g39486_i0 | PRJNA454503 | 39815 | 227 | 1.566265 | 3.55542155 | Verrucomicrobiales | 48461 | Bacteria | Bacteria | 70.1 | 6.64e-12 | NR | MES2438382.1 | 2026799 | g39486 | i0 | 75.5 | 4.61233480176211 | 49 | 12 | 64.8 | 0 | 151 | 5 | 2 | 50 | MES2438382.1 MATE family efflux transporter [Verrucomicrobiota bacterium] | diamond | 1047 | 70.5 | 0.994326241134752 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium | |||||
| 31656206 | 31656206 | PRJNA454503_P_NODE_71837_length_206_cov_0.896552_g71508_i0 | PRJNA454503 | 71837 | 206 | 0.896552 | 1.84689712 | Chthoniobacter sp. | 2510640 | Bacteria | Bacteria | 119 | 7.949999999999998e-30 | NR | MDR3405335.1 | 2510640 | g71508 | i0 | 80.9 | 0.990291262135922 | 68 | 13 | 99 | 0 | 205 | 2 | 310 | 377 | MDR3405335.1 translation elongation factor EF1A family protein [Chthoniobacter sp.] | diamond | 204 | 119 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Spartobacteria | Chthoniobacterales | Chthoniobacteraceae | Chthoniobacter | Chthoniobacter sp. | |
| 32004423 | 32004423 | PRJNA454503_P_NODE_81898_length_203_cov_0.915493_g81569_i0 | PRJNA454503 | 81898 | 203 | 0.915493 | 1.85845079 | Verrucomicrobiia bacterium | 2499141 | Bacteria | Bacteria | 44.3 | 0.00635 | NR | HUK81713.1 | 2499141 | g81569 | i0 | 30.6 | 0.916256157635468 | 62 | 42 | 91.6 | 1 | 196 | 11 | 246 | 306 | HUK81713.1 isoamylase [Verrucomicrobiia bacterium] | diamond | 186 | 44.3 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiia bacterium | ||||
| 32857212 | 32857212 | PRJNA454503_P_NODE_26120_length_246_cov_1.589189_g25791_i0 | PRJNA454503 | 26120 | 246 | 1.589189 | 3.90940494 | Luteolibacter algae | 454151 | Bacteria | Bacteria | 111 | 2.15e-26 | NR | WP_386817714.1 | 454151 | g25791 | i0 | 64.5 | 1.85365853658537 | 76 | 27 | 92.7 | 0 | 229 | 2 | 391 | 466 | WP_386817714.1 site-specific DNA-methyltransferase [Luteolibacter algae] | diamond | 456 | 111 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter algae |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;