RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA454503", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA454503 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18294431 18294431 PRJNA454503_P_NODE_72295_length_206_cov_0.896552_g71966_i0 PRJNA454503 72295 206 0.896552 1.84689712 Parachlamydia sp. AcF125 2795736 Bacteria Bacteria 59.3 3.23e-8   NR WP_213156828.1 2795736 g71966 i0 49.4 2.22815533980583 77 30 99 3 205 2 36 112 WP_213156828.1 RNA polymerase factor sigma-54 [Parachlamydia sp. AcF125] diamond 459 59.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp. AcF125
28970972 28970972 PRJNA454503_P_NODE_6908_length_429_cov_2.331522_g6579_i0 PRJNA454503 6908 429 2.331522 10.00222938 Chlamydia psittaci 83554 Bacteria Bacteria 56.6 7.46e-8   NR EPJ33784.1 1112244 g6579 i0 90.2 0.286713286713287 41 4 28.7 0 325 203 1 41 EPJ33784.1 hypothetical protein CP061683_1943, partial [Chlamydia psittaci 06-1683] diamond 123 56.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
29050393 29050393 PRJNA454503_P_NODE_76748_length_204_cov_1.818182_g76419_i0 PRJNA454503 76748 204 1.818182 3.70909128 Chlamydia 810 Bacteria Bacteria 60.5 2.53e-10   NR EPJ32822.1 1112244 g76419 i0 77.8 1.41176470588235 36 8 52.9 0 202 95 9 44 EPJ32822.1 hypothetical protein CP061683_2581, partial [Chlamydia psittaci 06-1683] diamond 288 60.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
29507603 29507603 PRJNA454503_P_NODE_66070_length_208_cov_0.884354_g65741_i0 PRJNA454503 66070 208 0.884354 1.83945632 Chlamydia psittaci 1 83554 Bacteria Bacteria 115 4.4899999999999997e-32   NR EPP35796.1 1238236 g65741 i0 92.3 0.9375 65 5 93.8 0 1 195 12 76 EPP35796.1 putative membrane protein, partial [Chlamydia psittaci 10_743_SC13] diamond 195 115 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
31118537 31118537 PRJNA454503_P_NODE_22615_length_258_cov_2.700508_g22286_i0 PRJNA454503 22615 258 2.700508 6.96731064 Chlamydia psittaci 83554 Bacteria Bacteria 86.7 1.47e-20   NR EPJ33125.1 1112244 g22286 i0 97.5 0.465116279069767 40 1 46.5 0 21 140 1 40 EPJ33125.1 hypothetical protein CP061683_1974, partial [Chlamydia psittaci 06-1683] diamond 120 86.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
31340070 31340070 PRJNA454503_P_NODE_73996_length_205_cov_1.326389_g73667_i0 PRJNA454503 73996 205 1.326389 2.71909745 Chlamydia psittaci 84-8471/1 1112230 Bacteria Bacteria 48.1 1.78e-5   NR EPP30210.1 1112230 g73667 i0 95.5 0.321951219512195 22 1 32.2 0 139 204 1 22 EPP30210.1 putative membrane protein, partial [Chlamydia psittaci 84-8471/1] diamond 66 48.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
31593338 31593338 PRJNA454503_P_NODE_19996_length_268_cov_3.024155_g19667_i0 PRJNA454503 19996 268 3.024155 8.1047354 Chlamydia psittaci 83554 Bacteria Bacteria 75.9 2.87e-16   NR EPP29147.1 1112246 g19667 i0 100 0.391791044776119 35 0 39.2 0 266 162 6 40 EPP29147.1 hypothetical protein CP082626L3_1338, partial [Chlamydia psittaci 08-2626_L3] diamond 105 75.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;