RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA454503", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 6 ✖

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA454503 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
442162 442162 PRJNA454503_P_NODE_22381_length_259_cov_5.590909_g22052_i0 PRJNA454503 22381 259 5.590909 14.48045431 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 457 4.279999999999999e-124   NTclustered gi|300078496|gb|GU001158.1| 5778 g22052 i0 98.828 26.9343629343629 256 3 99 0 1 256 4372 4117 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6976 457 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
2369245 2369245 PRJNA454503_P_NODE_6822_length_432_cov_4.021563_g6493_i0 PRJNA454503 6822 432 4.0215630000000004 17.37315216 Vermamoeba 1260114 Tubulinea other_Eukaryota 776 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g6493 i0 99.074 35.5694444444444 432 4 100 0 1 432 5551 5120 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 15366 776 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6820524 6820524 PRJNA454503_P_NODE_7646_length_406_cov_2.855072_g7317_i0 PRJNA454503 7646 406 2.855072 11.59159232 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 701 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g7317 i0 97.783 26.1576354679803 406 9 100 0 1 406 1210 1615 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10620 701 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13195661 13195661 PRJNA454503_P_NODE_15251_length_296_cov_2.123404_g14922_i0 PRJNA454503 15251 296 2.123404 6.28527584 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 542 1.34e-149   NTclustered gi|46393848|gb|AY502960.1| 5778 g14922 i0 99.662 83.7635135135135 296 1 100 0 1 296 1519 1814 Hartmannella vermiformis isolate KWR-2 18S ribosomal RNA gene, partial sequence blastn 24794 542 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19567969 19567969 PRJNA454503_P_NODE_23376_length_255_cov_2.000000_g23047_i0 PRJNA454503 23376 255 2 5.1 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 472 1.5e-128   NTclustered gi|300078496|gb|GU001158.1| 5778 g23047 i0 100 3.07450980392157 255 0 100 0 1 255 3673 3419 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 784 472 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21495491 21495491 PRJNA454503_P_NODE_36877_length_230_cov_2.301775_g36548_i0 PRJNA454503 36877 230 2.301775 5.2940825 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 414 2.27e-111   NTclustered gi|909719645|gb|KT185625.1| 5778 g36548 i0 99.13 25.0565217391304 230 2 100 0 1 230 3579 3808 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 5763 414 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;