RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA454503", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA454503 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28212873 28212873 PRJNA454503_P_NODE_27286_length_243_cov_1.802198_g26957_i0 PRJNA454503 27286 243 1.802198 4.37934114 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 50.1 1.01e-5   NR XP_004333525.1 1257118 g26957 i0 65.9 0.506172839506173 41 14 50.6 0 234 112 2 42 XP_004333525.1 Actobindin, putative [Acanthamoeba castellanii str. Neff] diamond 123 50.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29602060 29602060 PRJNA454503_P_NODE_52970_length_212_cov_1.721854_g52641_i0 PRJNA454503 52970 212 1.721854 3.65033048 Vannella simplex 197532 Discosea other_Eukaryota 65.1 7.51e-12   NR AUO29176.1 197532 g52641 i0 54.9 0.721698113207547 51 23 72.2 0 158 6 1 51 AUO29176.1 H(+)-transporting ATPase subunit 9 [Vannella simplex] diamond 153 65.1 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
32794037 32794037 PRJNA454503_P_NODE_27200_length_243_cov_2.126374_g26871_i0 PRJNA454503 27200 243 2.126374 5.16708882 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 45.4 9.76e-4   NR XP_004338297.1 1257118 g26871 i0 46.2 0.641975308641975 52 27 63 1 28 180 4 55 XP_004338297.1 uncharacterized protein ACA1_202670 [Acanthamoeba castellanii str. Neff] diamond 156 45.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;