RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA454154" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA454154 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13195558 13195558 PRJNA454154_S_NODE_111_length_275_cov_5.210084_g108_i0 PRJNA454154 111 275 5.210084 14.327731 Plasmopara pimpinellae 162137 SAR_Eukaryotes SAR_Eukaryotes 185 2.3899999999999998e-42   NTclustered gi|33520243|gb|AY273988.1| 162137 g108 i0 80.859 75.92 256 32 91 13 25 274 217 461 Plasmopara pimpinellae large subunit ribosomal RNA gene, partial sequence blastn 20878 185 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara pimpinellae
25319657 25319657 PRJNA454154_S_NODE_160_length_243_cov_3.737864_g157_i0 PRJNA454154 160 243 3.737864 9.08300952 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 180 9.63e-41   NTclustered gi|166303|gb|J05116.1|ACKCAL 4767 g157 i0 85.227 36.2510288065844 176 24 72 2 63 237 945 771 A.klebsiana calmodulin gene, complete cds blastn 8809 180 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya klebsiana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;