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contig_metadata

17 rows where bioproject = "PRJNA454154" and tax_phylum = "Chytridiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 17 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA454154 · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1716819 1716819 PRJNA454154_S_NODE_162_length_242_cov_7.463415_g159_i0 PRJNA454154 162 242 7.463415 18.0614643 Eukaryota 2759 Fungi Fungi 103 3.18e-25   NR TPX76562.1 246404 g159 i0 84.6 9.08677685950413 52 8 64.5 0 241 86 164 215 TPX76562.1 hypothetical protein CcCBS67573_g02181 [Chytriomyces confervae] diamond 2199 104 0.990384615384615 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Chytriomyces Chytriomyces confervae
2992593 2992593 PRJNA454154_S_NODE_183_length_236_cov_3.030151_g180_i0 PRJNA454154 183 236 3.030151 7.15115636 Synchytrium endobioticum 286115 Fungi Fungi 99 1.06e-23   NR TPX44958.1 286115 g180 i0 63.6 0.978813559322034 77 28 97.9 0 6 236 92 168 TPX44958.1 hypothetical protein SeLEV6574_g04175 [Synchytrium endobioticum] diamond 231 99 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium endobioticum
2992597 2992597 PRJNA454154_S_NODE_583_length_159_cov_0.918033_g580_i0 PRJNA454154 583 159 0.918033 1.4596724700000001 Chytriomycetaceae 1352827 Fungi Fungi 104 2.49e-25   NR TPX74992.1 246404 g580 i0 90.2 9.62264150943396 51 5 96.2 0 6 158 256 306 TPX74992.1 succinate dehydrogenase [Chytriomyces confervae] diamond 1530 105 0.990476190476191 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Chytriomyces Chytriomyces confervae
6196472 6196472 PRJNA454154_S_NODE_445_length_176_cov_9.712230_g442_i0 PRJNA454154 445 176 9.71223 17.0935248 Eukaryota 2759 Fungi Fungi 213 6.44e-51   NTclustered gi|311235598|ref|NG_027613.1| 110093 g442 i0 91.558 101.534090909091 154 13 88 0 4 157 2694 2847 Polychytrium aggregatum JEL 109 28S rRNA gene, partial sequence; from reference material blastn 17870 213 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
6819641 6819641 PRJNA454154_S_NODE_106_length_279_cov_10.454545_g103_i0 PRJNA454154 106 279 10.454545 29.16818055 Gaertneriomyces semiglobifer 109897 Fungi Fungi 183 8.73e-42   NTclustered gi|82398216|gb|DQ273778.1| 109897 g103 i0 94.872 42.2903225806452 117 6 42 0 163 279 2165 2281 Gaertneriomyces semiglobiferus isolate AFTOL-ID 34 28S ribosomal RNA gene, partial sequence blastn 11799 183 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Gaertneriomyces Gaertneriomyces semiglobifer
15744565 15744565 PRJNA454154_S_NODE_513_length_166_cov_14.643411_g510_i0 PRJNA454154 513 166 14.643411 24.30806226 Lobulomycetales sp. 2058121 Fungi Fungi 97.1 6.33e-16   NTclustered gi|2468791005|gb|OQ702918.1| 2058121 g510 i0 93.846 27.7951807228916 65 3 39 1 102 165 3925 3989 Lobulomycetales sp. isolate PSC233 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4614 97.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales     Lobulomycetales sp.
15744567 15744567 PRJNA454154_S_NODE_93_length_289_cov_31.694444_g90_i0 PRJNA454154 93 289 31.694444 91.59694316 Synchytrium sp. 1971732 Fungi Fungi 93.5 1.58e-14   NTclustered gi|1168020523|gb|KY800404.1| 1971732 g90 i0 83.168 0.349480968858132 101 17 35 0 45 145 1006 906 Synchytrium sp. voucher BPI 893319 large subunit ribosomal RNA gene, partial sequence blastn 101 93.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium sp.
16396025 16396025 PRJNA454154_S_NODE_33_length_396_cov_28.097493_g30_i0 PRJNA454154 33 396 28.097493 111.26607228 Staurastromyces 2006669 Fungi Fungi 108 7.98e-19   NTclustered gi|2465121858|gb|OQ687259.1| 687209 g30 i0 81.618 35.0505050505051 136 20 34 4 263 396 405 537 Uncultured Rhizophydiales isolate UMPB-1297 small subunit ribosomal RNA gene, partial sequence blastn 13880 108 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales     uncultured Rhizophydiales
18944918 18944918 PRJNA454154_S_NODE_15_length_467_cov_48.109302_g12_i0 PRJNA454154 15 467 48.109302 224.67044034 Nowakowskiella 109880 Fungi Fungi 154 1.2099999999999999e-32   NTclustered gi|194241380|gb|EU828507.1| 546781 g12 i0 96.774 18.7194860813704 93 2 20 1 374 466 308 217 Nowakowskiella sp. JH FR 28S large subunit ribosomal RNA gene, partial sequence blastn 8742 154 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella sp. JH FR
26664321 26664321 PRJNA454154_S_NODE_421_length_179_cov_4.908451_g418_i0 PRJNA454154 421 179 4.908451 8.78612729 Powellomyces hirtus 109895 Fungi Fungi 72 7.07e-13   NR TPX53717.1 109895 g418 i0 52.6 0.955307262569832 57 27 95.5 0 2 172 361 417 TPX53717.1 hypothetical protein PhCBS80983_g06210 [Powellomyces hirtus] diamond 171 72 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Powellomyces Powellomyces hirtus
30424064 30424064 PRJNA454154_S_NODE_153_length_249_cov_4.853774_g150_i0 PRJNA454154 153 249 4.853774 12.08589726 Gonapodya prolifera JEL478 1344416 Fungi Fungi 80.1 3.22e-17   NR KXS13505.1 1344416 g150 i0 79.2 1.27710843373494 53 11 63.9 0 247 89 62 114 KXS13505.1 ribosomal protein L36e [Gonapodya prolifera JEL478] diamond 318 80.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales Gonapodyaceae Gonapodya Gonapodya prolifera
30581432 30581432 PRJNA454154_S_NODE_293_length_198_cov_1.962733_g290_i0 PRJNA454154 293 198 1.962733 3.88621134 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 45.1 0.00324   NR KAH9257691.1 1357716 g290 i0 62.5 0.484848484848485 32 12 48.5 0 4 99 576 607 KAH9257691.1 hypothetical protein BASA81_004149 [Batrachochytrium salamandrivorans] diamond 96 45.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
30629282 30629282 PRJNA454154_S_NODE_313_length_194_cov_5.375796_g310_i0 PRJNA454154 313 194 5.375796 10.42904424 Fungi 4751 Fungi Fungi 94.4 1.9799999999999998e-23   NR XP_052971640.1 110093 g310 i0 78.2 31.4845360824742 55 12 85.1 0 6 170 37 91 XP_052971640.1 60S ribosomal protein L37 [Polychytrium aggregatum] diamond 6108 95.1 0.992639327024185 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
31308382 31308382 PRJNA454154_S_NODE_535_length_164_cov_3.700787_g532_i0 PRJNA454154 535 164 3.700787 6.06929068 Globomyces pollinis-pini 382532 Fungi Fungi 48.9 2.04e-5   NR KAI8898586.1 382532 g532 i0 64.5 1.40853658536585 31 11 56.7 0 163 71 90 120 KAI8898586.1 ribosomal protein L22e [Globomyces pollinis-pini] diamond 231 48.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Globomycetaceae Globomyces Globomyces pollinis-pini
31530037 31530037 PRJNA454154_S_NODE_616_length_155_cov_3.271186_g613_i0 PRJNA454154 616 155 3.271186 5.0703383 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 50.8 1.56e-5   NR KAH9246773.1 1357716 g613 i0 58.3 3.48387096774194 36 15 69.7 0 6 113 802 837 KAH9246773.1 elongation factor 2 [Batrachochytrium salamandrivorans] diamond 540 50.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
32337237 32337237 PRJNA454154_S_NODE_579_length_159_cov_1.795082_g576_i0 PRJNA454154 579 159 1.795082 2.85418038 Chytridiomycota 4761 Fungi Fungi 78.6 1.19e-15   NR KAJ3093258.1 109957 g576 i0 72.9 6.15094339622642 48 13 90.6 0 155 12 221 268 KAJ3093258.1 cross-pathway control WD-repeat protein cpc2, partial [Physocladia obscura] diamond 978 79 0.994936708860759 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Physocladia Physocladia obscura
32447590 32447590 PRJNA454154_S_NODE_379_length_185_cov_1.243243_g376_i0 PRJNA454154 379 185 1.243243 2.29999955 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 92.4 4.97e-20   NR KAH9251794.1 1357716 g376 i0 81.1 0.859459459459459 53 10 85.9 0 184 26 470 522 KAH9251794.1 hypothetical protein BASA81_010237 [Batrachochytrium salamandrivorans] diamond 159 92.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;