RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA454154", tax_clade = "Opisthokonta" and tax_phylum = "Porifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA454154 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4921543 4921543 PRJNA454154_S_NODE_444_length_176_cov_64.582734_g441_i0 PRJNA454154 444 176 64.582734 113.66561184 Demospongiae 6042 Porifera other_Eukaryota 145 2.38e-30   NTclustered gi|1918108416|gb|MW150047.1| 593584 g441 i0 87.218 75.5738636363636 133 10 75 5 1 132 316 442 Carteriospongia foliascens isolate CSGI08 large subunit ribosomal RNA gene, partial sequence blastn 13301 145 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Dictyoceratida Thorectidae Phyllospongia Phyllospongia foliascens
6196471 6196471 PRJNA454154_S_NODE_165_length_240_cov_404.748768_g162_i0 PRJNA454154 165 240 404.748768 971.3970432 Haplosclerida 6049 Porifera other_Eukaryota 108 4.54e-19   NTclustered gi|1284883228|gb|KY825184.1| 178514 g162 i0 81.159 9.86666666666667 138 22 57 3 72 208 3474 3340 Amphimedon compressa voucher MNRJ:18771 internal transcribed spacer 2 and 28S ribosomal RNA gene, partial sequence blastn 2368 108 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon compressa
28655251 28655251 PRJNA454154_S_NODE_287_length_198_cov_8.565217_g284_i0 PRJNA454154 287 198 8.565217 16.95912966 Oscarella lobularis 121494 Porifera other_Eukaryota 85.9 8.62e-20   NR XP_065840722.1 121494 g284 i0 84.1 5.24242424242424 44 7 66.7 0 3 134 72 115 XP_065840722.1 large ribosomal subunit protein eL33-like [Oscarella lobularis] diamond 1038 85.9 1 Eukaryota Opisthokonta Metazoa Porifera Homoscleromorpha Homosclerophorida Oscarellidae Oscarella Oscarella lobularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;