RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA454154", tax_clade = "Opisthokonta" and tax_phylum = "Annelida"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Annelida · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA454154 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6819643 6819643 PRJNA454154_S_NODE_186_length_234_cov_18.431472_g183_i0 PRJNA454154 186 234 18.431472 43.12964448 Apistobranchus typicus 195215 Annelida Annelida 84.2 7.43e-12   NTclustered gi|172053646|gb|EU418870.1| 195215 g183 i0 83.908 9.07264957264957 87 14 37 0 119 205 2984 3070 Apistobranchus typicus 28S ribosomal RNA gene, partial sequence blastn 2123 84.2 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Spionida Apistobranchidae Apistobranchus Apistobranchus typicus
23394152 23394152 PRJNA454154_S_NODE_259_length_205_cov_52.142857_g256_i0 PRJNA454154 259 205 52.142857 106.89285685 Lumbriculus sp. EZ-2019 2480966 Annelida Annelida 311 2.68e-80   NTclustered gi|1494622620|gb|MK076419.1| 2480966 g256 i0 99.415 80.1317073170732 171 1 83 0 35 205 3420 3250 Lumbriculus sp. EZ-2019 isolate ANN_LUMva large subunit ribosomal RNA gene, partial sequence blastn 16427 311 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Lumbriculida Lumbriculidae Lumbriculus Lumbriculus sp. EZ-2019
29555265 29555265 PRJNA454154_S_NODE_150_length_251_cov_4.542056_g147_i0 PRJNA454154 150 251 4.542056 11.40056056 Metazoa 33208 Annelida Annelida 79.3 6.9e-17   NR ABW23182.1 6344 g147 i0 78.7 5.05577689243028 47 10 56.2 0 5 145 70 116 ABW23182.1 ribosomal protein rpl27a, partial [Arenicola marina] diamond 1269 79.7 0.994981179422836 Eukaryota Opisthokonta Metazoa Annelida Polychaeta   Arenicolidae Arenicola Arenicola marina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;