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contig_metadata

11 rows where bioproject = "PRJNA454154" and tax_clade = "Amoebozoa"

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tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 11 ✖

bioproject 1

  • PRJNA454154 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
441962 441962 PRJNA454154_S_NODE_641_length_153_cov_2.155172_g638_i0 PRJNA454154 641 153 2.155172 3.29741316 Dictyostelium discoideum 44689 Evosea other_Eukaryota 172 9.22e-39   NTclustered gi|66806156|ref|XM_631708.1| 352472 g638 i0 87.333 4.52287581699346 150 19 98 0 4 153 660 809 Dictyostelium discoideum AX4 vitamin B6 biosynthesis family protein (DDB_G0288299) mRNA, complete cds blastn 692 172 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
2992596 2992596 PRJNA454154_S_NODE_543_length_163_cov_201.936508_g540_i0 PRJNA454154 543 163 201.936508 329.15650804 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 217 4.5499999999999996e-52   NTclustered gi|221185864|gb|FJ577811.1| 590481 g540 i0 91.925 2.52147239263804 161 4 99 4 1 161 1096 945 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 411 217 1 Eukaryota Amoebozoa             uncultured Amoebozoa
4268997 4268997 PRJNA454154_S_NODE_24_length_435_cov_38.027638_g21_i0 PRJNA454154 24 435 38.027638 165.4202253 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 798 0   NTclustered gi|221185864|gb|FJ577811.1| 590481 g21 i0 100 59.4827586206897 432 0 99 0 1 432 743 312 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 25875 798 1 Eukaryota Amoebozoa             uncultured Amoebozoa
11920751 11920751 PRJNA454154_S_NODE_90_length_291_cov_21.366142_g87_i0 PRJNA454154 90 291 21.366142 62.17547322 Filamoeba nolandi 136452 Evosea other_Eukaryota 534 2.1999999999999998e-147   NTclustered gi|57546814|gb|AY714368.1| 136452 g87 i0 100 79.1477663230241 289 0 99 0 3 291 122 410 Filamoeba nolandi strain CCAP1526 small subunit ribosomal RNA gene, complete sequence blastn 23032 534 1 Eukaryota Amoebozoa   Evosea Variosea     Filamoeba Filamoeba nolandi
13195560 13195560 PRJNA454154_S_NODE_131_length_262_cov_5.582222_g128_i0 PRJNA454154 131 262 5.582222 14.62542164 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 140 1.87e-41   NR XP_004334523.1 1257118 g128 i0 84 2.53053435114504 75 12 85.9 0 260 36 19 93 XP_004334523.1 ribosomal protein s27, putative [Acanthamoeba castellanii str. Neff] diamond 663 140 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13195561 13195561 PRJNA454154_S_NODE_31_length_401_cov_35.472527_g28_i0 PRJNA454154 31 401 35.472527 142.24483327 Filamoeba nolandi 136452 Evosea other_Eukaryota 702 0   NTclustered gi|57546814|gb|AY714368.1| 136452 g28 i0 98.259 75.6034912718204 402 6 100 1 1 401 990 589 Filamoeba nolandi strain CCAP1526 small subunit ribosomal RNA gene, complete sequence blastn 30317 702 1 Eukaryota Amoebozoa   Evosea Variosea     Filamoeba Filamoeba nolandi
18944919 18944919 PRJNA454154_S_NODE_275_length_201_cov_31.823171_g272_i0 PRJNA454154 275 201 31.823171 63.96457371 Vexillifera 218659 Root_unresolved Root_unresolved 366 5.5e-97   NTclustered gi|221185864|gb|FJ577811.1| 590481 g272 i0 99.502 39.1144278606965 201 1 100 0 1 201 1315 1515 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 7862 366 1 Eukaryota Amoebozoa             uncultured Amoebozoa
20843643 20843643 PRJNA454154_S_NODE_277_length_201_cov_13.359756_g274_i0 PRJNA454154 277 201 13.359756 26.85310956 Lobosea sp. Borok 297386 Tubulinea other_Eukaryota 350 5.539999999999999e-92   NTclustered gi|54306228|gb|AY626163.1| 297386 g274 i0 98.01 81.4577114427861 201 4 100 0 1 201 777 977 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 16373 350 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
25319658 25319658 PRJNA454154_S_NODE_200_length_226_cov_5.835979_g197_i0 PRJNA454154 200 226 5.835979 13.18931254 root 1 Root_unresolved Root_unresolved 96.7 2.1499999999999998e-24   NR ATE46696.1 1890364 g197 i0 81.3 1.69911504424779 64 12 85 0 3 194 9 72 ATE46696.1 ATPase subunit 9 [Planoprotostelium fungivorum] diamond 384 96.7 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
25319660 25319660 PRJNA454154_S_NODE_40_length_374_cov_32.397626_g37_i0 PRJNA454154 40 374 32.397626 121.16712124 Tubulinea 555369 Tubulinea other_Eukaryota 409 1.83e-109   NTclustered gi|11527302|gb|AF293895.1|AF293895 136450 g37 i0 91.837 77.7459893048128 294 22 79 1 57 350 868 1159 Echinamoeba exundans small subunit ribosomal RNA gene, complete sequence blastn 29077 409 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans
32226017 32226017 PRJNA454154_S_NODE_578_length_159_cov_1.803279_g575_i0 PRJNA454154 578 159 1.803279 2.86721361 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 47.8 5.49e-5   NR XP_638408.1 352472 g575 i0 63.6 1.94339622641509 33 12 62.3 0 1 99 89 121 XP_638408.1 hypothetical protein DDB_G0284793 [Dictyostelium discoideum AX4] diamond 309 47.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;