RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA453567" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA453567 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22118358 22118358 PRJNA453567_P_NODE_27378_length_167_cov_1.800000_g27141_i0 PRJNA453567 27378 167 1.8 3.006 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 58.4 3.01e-4   NTclustered gi|2806461532|ref|XM_068504666.1| 1144522 g27141 i0 97.059 0.203592814371257 34 1 20 0 39 72 305 272 Tritrichomonas foetus Myb-like DNA-binding domain containing protein (TRFO_25972), partial mRNA blastn 34 58.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
26823101 26823101 PRJNA453567_P_NODE_33061_length_152_cov_2.252174_g32824_i0 PRJNA453567 33061 152 2.252174 3.42330448 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 56.2 1.31e-7   NR XP_001326979.1 412133 g32824 i0 61.7 0.927631578947368 47 18 92.8 0 141 1 20 66 XP_001326979.1 ATPase activity, coupled to transmembrane movement of substances [Trichomonas vaginalis G3] diamond 141 56.2 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27012781 27012781 PRJNA453567_P_NODE_24082_length_179_cov_1.098592_g23845_i0 PRJNA453567 24082 179 1.098592 1.96647968 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 61.2 4.71e-9   NR XP_001327720.1 412133 g23845 i0 50.9 0.888268156424581 53 26 88.8 0 179 21 489 541 XP_001327720.1 guanyl-nucleotide exchange factor family [Trichomonas vaginalis G3] diamond 159 61.2 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27186978 27186978 PRJNA453567_P_NODE_15322_length_231_cov_1.041237_g15085_i0 PRJNA453567 15322 231 1.041237 2.40525747 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 79.7 3.68e-16   NR XP_067774595.1 135588 g15085 i0 72.3 10.9220779220779 47 13 61 0 89 229 5 51 XP_067774595.1 putative ADP-ribosylation factor GTPase-activating protein AGD15 [Histomonas meleagridis] diamond 2523 80.5 0.990062111801242 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
28418974 28418974 PRJNA453567_P_NODE_23026_length_183_cov_1.602740_g22789_i0 PRJNA453567 23026 183 1.60274 2.9330142 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 76.6 1.84e-14   NR XP_068352044.1 1144522 g22789 i0 68.8 2.36065573770492 48 15 78.7 0 2 145 481 528 XP_068352044.1 Alpha amylase, catalytic domain containing protein [Tritrichomonas foetus] diamond 432 77 0.994805194805195 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
29760089 29760089 PRJNA453567_P_NODE_4631_length_485_cov_1.537946_g4398_i0 PRJNA453567 4631 485 1.537946 7.4590381 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 132 3.4799999999999996e-32   NR XP_067778506.1 135588 g4398 i0 47.8 0.983505154639175 159 81 98.4 2 481 5 107 263 XP_067778506.1 calcium-translocating P-type ATPase, PMCA-type family protein [Histomonas meleagridis] diamond 477 132 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
31181644 31181644 PRJNA453567_P_NODE_29355_length_162_cov_0.936000_g29118_i0 PRJNA453567 29355 162 0.936 1.51632 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 62.4 8.65e-10   NR XP_068350768.1 1144522 g29118 i0 59.6 1.90740740740741 52 20 94.4 1 161 9 71 122 XP_068350768.1 Poly(A) ribonuclease pop2 [Tritrichomonas foetus] diamond 309 62.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31324590 31324590 PRJNA453567_P_NODE_29235_length_162_cov_1.248000_g28998_i0 PRJNA453567 29235 162 1.248 2.02176 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 58.9 9.53e-9   NR XP_001313551.1 412133 g28998 i0 49 2.64814814814815 49 25 90.7 0 16 162 7 55 XP_001313551.1 retrograde vesicle-mediated transport, Golgi to ER [Trichomonas vaginalis G3] diamond 429 58.9 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32067540 32067540 PRJNA453567_P_NODE_30198_length_159_cov_1.819672_g29961_i0 PRJNA453567 30198 159 1.819672 2.89327848 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 62 1.94e-9   NR XP_067774513.1 135588 g29961 i0 60 0.943396226415094 50 20 94.3 0 1 150 205 254 XP_067774513.1 serine/threonine-protein kinase Nek1-like [Histomonas meleagridis] diamond 150 62 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
32542503 32542503 PRJNA453567_P_NODE_6599_length_387_cov_1.111429_g6363_i0 PRJNA453567 6599 387 1.111429 4.30123023 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 53.1 3.6e-5   NR XP_001309405.2 412133 g6363 i0 38.3 3.36434108527132 81 46 62.8 2 308 66 209 285 XP_001309405.2 phosphoprotein phosphatase protein [Trichomonas vaginalis G3] diamond 1302 53.1 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32590200 32590200 PRJNA453567_P_NODE_5199_length_451_cov_2.393720_g4964_i0 PRJNA453567 5199 451 2.39372 10.7956772 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 47.4 0.00226   NR XP_067774840.1 135588 g4964 i0 66.7 1.75609756097561 33 11 22 0 5 103 113 145 XP_067774840.1 ubiquitin-conjugating enzyme E2 5B-like [Histomonas meleagridis] diamond 792 47.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
32605369 32605369 PRJNA453567_P_NODE_17800_length_211_cov_2.235632_g17563_i0 PRJNA453567 17800 211 2.235632 4.71718352 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 42 0.0477   NR XP_068347480.1 1144522 g17563 i0 37.3 0.838862559241706 59 35 83.9 1 35 211 32 88 XP_068347480.1 WD repeat protein [Tritrichomonas foetus] diamond 177 42 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;