RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA453567" and tax_phylum = "Armatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA453567 · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22118306 22118306 PRJNA453567_P_NODE_18998_length_203_cov_3.283133_g18761_i0 PRJNA453567 18998 203 3.283133 6.66475999 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 364 2e-96   NTclustered gi|939602053|gb|KR854976.1| 157466 g18761 i0 99.015 99.9162561576355 203 2 100 0 1 203 215 13 Uncultured Armatimonadetes bacterium clone OTU_23692 16S ribosomal RNA gene, partial sequence blastn 20283 364 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
27044527 27044527 PRJNA453567_P_NODE_14722_length_236_cov_1.552764_g14485_i0 PRJNA453567 14722 236 1.552764 3.66452304 Armatimonas sp. 1872638 Bacteria Bacteria 70.5 5.67e-12   NR WP_309721585.1 1872638 g14485 i0 60 2.83474576271186 55 19 69.9 2 72 236 25 76 WP_309721585.1 beta-L-arabinofuranosidase domain-containing protein [Armatimonas sp.] diamond 669 70.5 1 Bacteria   Bacillati Armatimonadota Armatimonadia Armatimonadales Armatimonadaceae Armatimonas Armatimonas sp.
27329119 27329119 PRJNA453567_P_NODE_23903_length_180_cov_1.083916_g23666_i0 PRJNA453567 23903 180 1.083916 1.9510488 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 60.8 6.43e-9   NR HRK20191.1 2682144 g23666 i0 46.6 1.81666666666667 58 31 96.7 0 2 175 256 313 HRK20191.1 family 78 glycoside hydrolase catalytic domain [Fimbriimonadaceae bacterium] diamond 327 60.8 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
28623760 28623760 PRJNA453567_P_NODE_16307_length_222_cov_1.724324_g16070_i0 PRJNA453567 16307 222 1.724324 3.82799928 Armatimonadota bacterium 2033014 Bacteria Bacteria 60.1 2.16e-8   NR MCX7597621.1 2033014 g16070 i0 51.7 0.783783783783784 58 25 78.4 1 42 215 466 520 MCX7597621.1 HAD-IC family P-type ATPase [Armatimonadota bacterium] diamond 174 60.1 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29128991 29128991 PRJNA453567_P_NODE_18269_length_208_cov_1.596491_g18032_i0 PRJNA453567 18269 208 1.596491 3.32070128 Armatimonadota bacterium 2033014 Bacteria Bacteria 64.3 5.84e-10   NR MBW3635075.1 2033014 g18032 i0 62 3.98076923076923 50 19 72.1 0 162 13 52 101 MBW3635075.1 hypothetical protein [Armatimonadota bacterium] diamond 828 64.3 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30138914 30138914 PRJNA453567_P_NODE_1352_length_1007_cov_3.739175_g1234_i0 PRJNA453567 1352 1007 3.739175 37.65349225 Chthonomonadales bacterium 2282151 Bacteria Bacteria 182 1.57e-51   NR HXG23262.1 2282151 g1234 i0 37.9 2.59781529294935 280 162 82.2 6 54 881 12 283 HXG23262.1 S1/P1 nuclease [Chthonomonadales bacterium] diamond 2616 182 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales     Chthonomonadales bacterium
31782726 31782726 PRJNA453567_P_NODE_2157_length_782_cov_2.735570_g1992_i0 PRJNA453567 2157 782 2.73557 21.3921574 Chthonomonadaceae bacterium 2739509 Bacteria Bacteria 99.4 1.35e-22   NR MBC7526332.1 2739509 g1992 i0 52.1 0.725063938618926 94 44 35.7 1 742 464 2 95 MBC7526332.1 Dabb family protein [Chthonomonadaceae bacterium] diamond 567 99.4 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae   Chthonomonadaceae bacterium
32194270 32194270 PRJNA453567_P_NODE_23518_length_181_cov_1.618056_g23281_i0 PRJNA453567 23518 181 1.618056 2.92868136 Capsulimonas sp. 2494211 Bacteria Bacteria 74.7 8.37e-14   NR WP_348222540.1 2494211 g23281 i0 51.7 2.98342541436464 60 29 99.4 0 181 2 42 101 WP_348222540.1 deoxyribodipyrimidine photo-lyase [Capsulimonas sp.] diamond 540 74.7 1 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales Capsulimonadaceae Capsulimonas Capsulimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;