RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA453567", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA453567 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9369788 9369788 PRJNA453567_P_NODE_9328_length_312_cov_1.981818_g9091_i0 PRJNA453567 9328 312 1.981818 6.18327216 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 111 5.440000000000001e-26   NR MCC6699139.1 2030809 g9091 i0 55.1 6.69230769230769 98 41 94.2 1 311 18 743 837 MCC6699139.1 FAD-dependent oxidoreductase [Candidatus Hydrogenedentota bacterium] diamond 2088 111 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
27012787 27012787 PRJNA453567_P_NODE_33182_length_152_cov_1.356522_g32945_i0 PRJNA453567 33182 152 1.356522 2.06191344 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 80.1 4.88e-16   NR HOJ69025.1 2030809 g32945 i0 62 1.97368421052632 50 19 98.7 0 151 2 233 282 HOJ69025.1 glycoside hydrolase family 99 protein [Candidatus Hydrogenedentota bacterium] diamond 300 80.1 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
29428926 29428926 PRJNA453567_P_NODE_8249_length_338_cov_2.043189_g8012_i0 PRJNA453567 8249 338 2.043189 6.90597882 Bacteria 2 Bacteria Bacteria 107 2.22e-27   NR MCC6485955.1 2030809 g8012 i0 47.7 1.89940828402367 107 56 95 0 331 11 14 120 MCC6485955.1 hypothetical protein [Candidatus Hydrogenedentota bacterium] diamond 642 108 0.990740740740741 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;