RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA453567", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA453567 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20219657 20219657 PRJNA453567_P_NODE_7336_length_362_cov_66.729231_g7099_i0 PRJNA453567 7336 362 66.729231 241.55981622 Tubulinea 555369 Tubulinea other_Eukaryota 532 1.01e-146   NTclustered gi|11527302|gb|AF293895.1|AF293895 136450 g7099 i0 93.048 101.563535911602 374 10 100 11 1 362 1302 1671 Echinamoeba exundans small subunit ribosomal RNA gene, complete sequence blastn 36766 532 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans
27913417 27913417 PRJNA453567_P_NODE_32185_length_154_cov_2.333333_g31948_i0 PRJNA453567 32185 154 2.333333 3.59333282 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 90.5 3.74e-20   NR AFX84545.1 5778 g31948 i0 82.4 51.6623376623377 51 9 99.4 0 153 1 83 133 AFX84545.1 alpha tubulin, partial [Vermamoeba vermiformis] diamond 7956 90.5 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29129002 29129002 PRJNA453567_P_NODE_26449_length_170_cov_2.022556_g26212_i0 PRJNA453567 26449 170 2.022556 3.4383452 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 92.8 1.98e-22   NR ABD72565.1 5778 g26212 i0 73.2 0.988235294117647 56 15 98.8 0 169 2 35 90 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 168 92.8 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
30170775 30170775 PRJNA453567_P_NODE_11012_length_281_cov_2.237705_g10775_i0 PRJNA453567 11012 281 2.237705 6.28795105 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 76.6 1.69e-14   NR AAY21191.1 5778 g10775 i0 55.1 1.66548042704626 78 35 83.3 0 3 236 169 246 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 468 76.6 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;