RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA453111", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 5 ✖

tax_phylum 1

  • Myxococcota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA453111 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5545173 5545173 PRJNA453111_P_NODE_605_length_1046_cov_2.182939_g546_i0 PRJNA453111 605 1046 2.182939 22.83354194 Myxococcota bacterium 2818507 Bacteria Bacteria 286 6.49e-86   NR MDJ0869580.1 2818507 g546 i0 42.8 1.76099426386233 306 156 87.8 5 84 1001 511 797 MDJ0869580.1 BPTI/Kunitz-type proteinase inhibitor domain-containing protein [Myxococcota bacterium] diamond 1842 286 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
10645251 10645251 PRJNA453111_P_NODE_12669_length_242_cov_1.822485_g12577_i0 PRJNA453111 12669 242 1.822485 4.4104137 Pendulispora albinea 2741071 Bacteria Bacteria 348 2.48e-91   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g12577 i0 92.562 162.900826446281 242 18 100 0 1 242 3588997 3589238 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 39422 348 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
26600960 26600960 PRJNA453111_P_NODE_7761_length_290_cov_1.419355_g7669_i0 PRJNA453111 7761 290 1.419355 4.1161295 Polyangia bacterium 3058050 Bacteria Bacteria 44.7 0.0126   NR HSS37185.1 3058050 g7669 i0 38.8 1.75862068965517 85 49 85.9 2 1 249 99 182 HSS37185.1 adenylosuccinate lyase [Polyangia bacterium] diamond 510 44.7 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
28244486 28244486 PRJNA453111_P_NODE_3266_length_450_cov_2.408488_g3174_i0 PRJNA453111 3266 450 2.408488 10.838196 unclassified Corallococcus 2685029 Bacteria Bacteria 164 3.34e-46   NR WP_206797742.1 2685029 g3174 i0 53 3.96666666666667 149 67 98.7 2 448 5 200 346 WP_206797742.1 MULTISPECIES: M35 family metallo-endopeptidase [unclassified Corallococcus] diamond 1785 164 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus  
28307889 28307889 PRJNA453111_P_NODE_11166_length_247_cov_1.327586_g11074_i0 PRJNA453111 11166 247 1.327586 3.27913742 Archangium sp. 1872627 Bacteria Bacteria 59.3 5.37e-8   NR MDP1828757.1 1872627 g11074 i0 48.8 2.97570850202429 82 34 99.6 1 1 246 98 171 MDP1828757.1 LysM peptidoglycan-binding domain-containing protein [Archangium sp.] diamond 735 59.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;