RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA453111" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA453111 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28276112 28276112 PRJNA453111_P_NODE_12926_length_242_cov_0.899408_g12834_i0 PRJNA453111 12926 242 0.899408 2.17656736 Blyttiomyces sp. JEL 2750429 Fungi Fungi 70.5 6.32e-12   NR KAJ3331686.1 2724214 g12834 i0 43.4 2.04545454545455 83 44 99.2 1 242 3 1256 1338 KAJ3331686.1 HIR complex subunit [Blyttiomyces sp. JEL0837] diamond 495 70.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes     Blyttiomyces Blyttiomyces sp. JEL0837
28529018 28529018 PRJNA453111_P_NODE_11947_length_245_cov_0.895349_g11855_i0 PRJNA453111 11947 245 0.895349 2.19360505 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 145 3.52e-38   NR KAH9255701.1 1357716 g11855 i0 92.6 1.98367346938776 81 6 99.2 0 2 244 634 714 KAH9255701.1 V-type H(+)-translocating pyrophosphatase [Batrachochytrium salamandrivorans] diamond 486 145 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
32383993 32383993 PRJNA453111_P_NODE_10739_length_249_cov_0.875000_g10647_i0 PRJNA453111 10739 249 0.875 2.17875 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 47.8 7.31e-5   NR KAH9260029.1 1357716 g10647 i0 46.7 0.542168674698795 45 24 54.2 0 241 107 38 82 KAH9260029.1 hypothetical protein BASA81_001801 [Batrachochytrium salamandrivorans] diamond 135 47.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;