RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA453111", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

  • Metazoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA453111 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1716290 1716290 PRJNA453111_P_NODE_6342_length_321_cov_2.479839_g6250_i0 PRJNA453111 6342 321 2.479839 7.96028319 Echinococcus multilocularis 6211 Platyhelminthes Platyhelminthes 60.5 3.63e-8   NR CUT99749.1 6211 g6250 i0 51.2 0.803738317757009 86 40 79.4 2 66 320 131 215 CUT99749.1 rRNA promoter binding protein [Echinococcus multilocularis] diamond 258 60.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Echinococcus Echinococcus multilocularis
14470082 14470082 PRJNA453111_P_NODE_5272_length_352_cov_1.032258_g5180_i0 PRJNA453111 5272 352 1.032258 3.63354816 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 54.7 0.009   NTclustered gi|690889185|emb|LN393638.1| 99802 g5180 i0 100 0.0823863636363636 29 0 8 0 80 108 412 440 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_contig0152950 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
29539095 29539095 PRJNA453111_P_NODE_10850_length_248_cov_1.320000_g10758_i0 PRJNA453111 10850 248 1.32 3.2736 Macrostomum lignano 282301 Platyhelminthes Platyhelminthes 104 2.01e-24   NR PAA66530.1 282301 g10758 i0 58 1.95967741935484 81 34 98 0 6 248 175 255 PAA66530.1 hypothetical protein BOX15_Mlig030441g1 [Macrostomum lignano] diamond 486 104 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Macrostomida Macrostomidae Macrostomum Macrostomum lignano
30060546 30060546 PRJNA453111_P_NODE_12811_length_242_cov_0.911243_g12719_i0 PRJNA453111 12811 242 0.911243 2.20520806 Metazoa 33208 Platyhelminthes Platyhelminthes 62.8 1.94e-9   NR CAH8610213.1 39320 g12719 i0 38.7 4.37603305785124 75 46 93 0 227 3 1 75 CAH8610213.1 unnamed protein product [Heterobilharzia americana] diamond 1059 63.2 0.993670886075949 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Heterobilharzia Heterobilharzia americana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;