RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA453111", tax_kingdom = "Bacillati" and tax_phylum = "Actinomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 6 ✖

tax_kingdom 1

  • Bacillati · 6 ✖

bioproject 1

  • PRJNA453111 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8094537 8094537 PRJNA453111_P_NODE_11727_length_246_cov_0.890173_g11635_i0 PRJNA453111 11727 246 0.890173 2.18982558 Streptomyces sp. NBC_00564 2903663 Bacteria Bacteria 56.5 0.002   NTclustered gi|2667518664|gb|CP107786.1| 2903663 g11635 i0 100 0.121951219512195 30 0 12 0 30 59 1030285 1030256 Streptomyces sp. NBC_00564 strain NBC 00564 chromosome, complete genome blastn 30 56.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NBC_00564
16395394 16395394 PRJNA453111_P_NODE_12133_length_244_cov_0.900585_g12041_i0 PRJNA453111 12133 244 0.900585 2.1974274 Pseudonocardiaceae 2070 Bacteria Bacteria 407 4.08e-109   NTclustered gi|2667020334|dbj|AP029207.1| 1933 g12041 i0 97.872 259.827868852459 235 5 96 0 1 235 3410 3176 Streptoalloteichus tenebrarius JCM 4838 DNA, complete genome blastn 63398 407 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Streptoalloteichus Streptoalloteichus tenebrarius
27123620 27123620 PRJNA453111_P_NODE_10182_length_251_cov_0.814607_g10090_i0 PRJNA453111 10182 251 0.814607 2.04466357 Brevibacterium 1696 Bacteria Bacteria 43.1 0.0277   NR WP_332839751.1 946573 g10090 i0 51.4 1.32669322709163 37 17 43 1 236 129 210 246 WP_332839751.1 glycosyltransferase family 2 protein [Brevibacterium yomogidense] diamond 333 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium yomogidense
29002892 29002892 PRJNA453111_P_NODE_12648_length_243_cov_0.894118_g12556_i0 PRJNA453111 12648 243 0.894118 2.17270674 Dactylosporangium fulvum 53359 Bacteria Bacteria 42.7 0.0363   NR WP_259862636.1 53359 g12556 i0 40 0.679012345679012 55 28 61.7 1 48 197 443 497 WP_259862636.1 HNH endonuclease signature motif containing protein [Dactylosporangium fulvum] diamond 165 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Dactylosporangium Dactylosporangium fulvum
29223649 29223649 PRJNA453111_P_NODE_12589_length_243_cov_0.905882_g12497_i0 PRJNA453111 12589 243 0.905882 2.20129326 Actinokineospora auranticolor 155976 Bacteria Bacteria 42.4 0.0477   NR PPK65354.1 155976 g12497 i0 31.2 0.950617283950617 77 52 93.8 1 243 16 23 99 PPK65354.1 hypothetical protein CLV40_1146 [Actinokineospora auranticolor] diamond 231 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinokineospora Actinokineospora auranticolor
32415787 32415787 PRJNA453111_P_NODE_12899_length_242_cov_0.911243_g12807_i0 PRJNA453111 12899 242 0.911243 2.20520806 Nesterenkonia massiliensis 1232429 Bacteria Bacteria 147 5.93e-39   NR WP_044494056.1 1232429 g12807 i0 97.5 0.991735537190083 80 2 99.2 0 242 3 324 403 WP_044494056.1 UvrD-helicase domain-containing protein [Nesterenkonia massiliensis] diamond 240 147 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Nesterenkonia Nesterenkonia massiliensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;