RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA453111", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA453111 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28907460 28907460 PRJNA453111_P_NODE_10928_length_248_cov_0.880000_g10836_i0 PRJNA453111 10928 248 0.88 2.1824 Nitzschia inconspicua 303405 SAR_Eukaryotes SAR_Eukaryotes 169 6.989999999999999e-47   NR KAG7350616.1 303405 g10836 i0 91.3 1.93548387096774 80 7 96.8 0 247 8 359 438 KAG7350616.1 UDP-glucuronosyltransferase [Nitzschia inconspicua] diamond 480 169 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia inconspicua
30424033 30424033 PRJNA453111_P_NODE_12613_length_243_cov_0.905882_g12521_i0 PRJNA453111 12613 243 0.905882 2.20129326 Nitzschia inconspicua 303405 SAR_Eukaryotes SAR_Eukaryotes 49.7 1.07e-4   NR KAG7336972.1 303405 g12521 i0 41 1.92592592592593 78 37 96.3 2 236 3 62 130 KAG7336972.1 hypothetical protein IV203_017421 [Nitzschia inconspicua] diamond 468 49.7 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia inconspicua

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;