RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA451191" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA451191 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8745572 8745572 PRJNA451191_P_NODE_11867_length_432_cov_1.752022_g11596_i0 PRJNA451191 11867 432 1.752022 7.56873504 Desulfolutivibrio 2773294 Bacteria Bacteria 508 2.06e-139   NTclustered gi|1863422180|gb|CP045504.1| 1121464 g11596 i0 88.073 517.020833333333 436 43 100 7 1 432 1153756 1154186 Desulfolutivibrio sulfodismutans DSM 3696 chromosome, complete genome blastn 223353 508 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfolutivibrio Desulfolutivibrio sulfodismutans
24667135 24667135 PRJNA451191_P_NODE_47660_length_209_cov_0.878378_g47389_i0 PRJNA451191 47660 209 0.878378 1.83581002 Desulfovibrio sp. 885 Bacteria Bacteria 90.1 4.87e-19   NR MBI4805591.1 885 g47389 i0 75.4 1.98086124401914 69 17 99 0 2 208 360 428 MBI4805591.1 methyl-accepting chemotaxis protein [Desulfovibrio sp.] diamond 414 90.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;