RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA451191" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA451191 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
440305 440305 PRJNA451191_P_NODE_27201_length_272_cov_2.819905_g26930_i0 PRJNA451191 27201 272 2.819905 7.6701416 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 383 7.79e-102   NTclustered gi|2874253978|emb|OY970303.1| 412054 g26930 i0 92.029 99.8345588235294 276 16 100 4 1 272 1903430 1903157 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 27155 383 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
5543990 5543990 PRJNA451191_P_NODE_24945_length_285_cov_1.450893_g24674_i0 PRJNA451191 24945 285 1.450893 4.1350450500000004 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 403 6.31e-108   NTclustered gi|2874253978|emb|OY970303.1| 412054 g24674 i0 93.407 181.178947368421 273 17 100 1 1 273 1903886 1904157 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 51636 403 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;