RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA451191" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA451191 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1092740 1092740 PRJNA451191_P_NODE_53801_length_203_cov_0.915493_g53530_i0 PRJNA451191 53801 203 0.915493 1.85845079 Pseudobdellovibrio 2862745 Bacteria Bacteria 353 4.33e-93   NTclustered gi|507148233|ref|NR_103040.1| 453816 g53530 i0 98.03 182.408866995074 203 4 100 0 1 203 1216 1014 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 37029 353 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
2990607 2990607 PRJNA451191_P_NODE_18103_length_339_cov_9.370504_g17832_i0 PRJNA451191 18103 339 9.370504 31.76600856 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 499 9.51e-137   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g17832 i0 93.215 101.955752212389 339 23 100 0 1 339 3446972 3447310 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 34563 499 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
8745695 8745695 PRJNA451191_P_NODE_42727_length_218_cov_0.828025_g42456_i0 PRJNA451191 42727 218 0.828025 1.8050945 Peredibacter 263370 Bacteria Bacteria 368 1.68e-97   NTclustered gi|2631252187|gb|CP139487.1| 28202 g42456 i0 98.558 89.3256880733945 208 3 95 0 11 218 513594 513387 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 19473 368 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
15742929 15742929 PRJNA451191_P_NODE_27013_length_273_cov_2.933962_g26742_i0 PRJNA451191 27013 273 2.933962 8.00971626 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 438 1.6499999999999995e-118   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g26742 i0 95.604 97.6556776556776 273 12 100 0 1 273 3446952 3446680 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 26660 438 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;