RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA451191", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA451191 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8092834 8092834 PRJNA451191_P_NODE_10487_length_464_cov_2.148883_g10216_i0 PRJNA451191 10487 464 2.148883 9.97081712 Labilithrix luteola 1391654 Bacteria Bacteria 568 3.6199999999999987e-157   NTclustered gi|913610804|gb|CP012333.1| 1391654 g10216 i0 88.747 113.691810344828 471 43 100 7 1 464 3943484 3943017 Labilithrix luteola strain DSM 27648, complete genome blastn 52753 568 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
11295856 11295856 PRJNA451191_P_NODE_47169_length_209_cov_1.986486_g46898_i0 PRJNA451191 47169 209 1.986486 4.15175574 Polyangiaceae 49 Bacteria Bacteria 331 2.1e-86   NTclustered gi|169977285|emb|AM946600.1| 52 g46898 i0 95.215 136.157894736842 209 10 100 0 1 209 932 1140 Chondromyces crocatus ajudazol biosynthesis gene cluster, strain Cmc5 blastn 28457 331 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;