RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA451191", tax_clade = "Sar" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA451191 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10644470 10644470 PRJNA451191_P_NODE_35909_length_237_cov_3.272727_g35638_i0 PRJNA451191 35909 237 3.272727 7.75636299 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 438 1.4e-118   NTclustered gi|325195057|emb|FR825852.1| 890382 g35638 i0 100 95.6919831223629 237 0 100 0 1 237 166 402 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 22679 438 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
17017544 17017544 PRJNA451191_P_NODE_26154_length_278_cov_1.695853_g25883_i0 PRJNA451191 26154 278 1.695853 4.71447134 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 497 2.73e-136   NTclustered gi|937408816|ref|NC_027966.1| 114742 g25883 i0 98.921 104.478417266187 278 3 100 0 1 278 11293 11016 Pythium insidiosum mitochondrial DNA, complete genome blastn 29045 497 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
20842751 20842751 PRJNA451191_P_NODE_53797_length_203_cov_0.915493_g53526_i0 PRJNA451191 53797 203 0.915493 1.85845079 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 364 2e-96   NTclustered gi|937408816|ref|NC_027966.1| 114742 g53526 i0 99.015 103.448275862069 203 2 100 0 1 203 10572 10370 Pythium insidiosum mitochondrial DNA, complete genome blastn 21000 364 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;