RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA451191", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA451191 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8092890 8092890 PRJNA451191_P_NODE_12187_length_426_cov_1.224658_g11916_i0 PRJNA451191 12187 426 1.224658 5.21704308 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 676 0   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g11916 i0 95.508 69.1807511737089 423 19 99 0 4 426 3558061 3557639 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 29471 676 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
18292231 18292231 PRJNA451191_P_NODE_35855_length_238_cov_1.152542_g35584_i0 PRJNA451191 35855 238 1.152542 2.74304996 Luteolibacter luteus 2728835 Bacteria Bacteria 329 8.82e-86   NTclustered gi|1835317346|gb|CP051774.1| 2728835 g35584 i0 91.983 283.957983193277 237 16 98 2 5 238 3804523 3804759 Luteolibacter luteus strain G-1-1-1 chromosome, complete genome blastn 67582 329 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus
19565554 19565554 PRJNA451191_P_NODE_12316_length_423_cov_2.378453_g12045_i0 PRJNA451191 12316 423 2.378453 10.06085619 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 749 0   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g12045 i0 98.582 89.0851063829787 423 6 100 0 1 423 3556760 3557182 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 37683 749 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
20842738 20842738 PRJNA451191_P_NODE_53377_length_203_cov_1.802817_g53106_i0 PRJNA451191 53377 203 1.802817 3.65971851 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 353 4.33e-93   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g53106 i0 98.03 37.512315270936 203 4 100 0 1 203 3556729 3556527 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 7615 353 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
29760045 29760045 PRJNA451191_P_NODE_47531_length_209_cov_0.878378_g47260_i0 PRJNA451191 47531 209 0.878378 1.83581002 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42 0.0446   NR MFN5655454.1 2026799 g47260 i0 32.7 0.789473684210526 55 35 78.9 1 43 207 354 406 MFN5655454.1 oligosaccharide flippase family protein [Verrucomicrobiota bacterium] diamond 165 42 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29791611 29791611 PRJNA451191_P_NODE_34931_length_241_cov_1.288889_g34660_i0 PRJNA451191 34931 241 1.288889 3.10622249 Opitutia bacterium 2026771 Bacteria Bacteria 43.5 0.0184   NR MBI5425804.1 2026771 g34660 i0 44.7 1.1701244813278 47 26 58.5 0 39 179 247 293 MBI5425804.1 MFS transporter [Opitutia bacterium] diamond 282 43.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
31972662 31972662 PRJNA451191_P_NODE_47478_length_209_cov_0.878378_g47207_i0 PRJNA451191 47478 209 0.878378 1.83581002 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 54.7 9.04e-7   NR MCW5559863.1 2499141 g47207 i0 74.4 1.10526315789474 39 10 56 0 91 207 8 46 MCW5559863.1 type II secretion system protein [Verrucomicrobiia bacterium] diamond 231 54.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;