RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA451191", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA451191 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1714839 1714839 PRJNA451191_P_NODE_18602_length_334_cov_2.622711_g18331_i0 PRJNA451191 18602 334 2.622711 8.75985474 Kolteria novifilia 2527975 Bacteria Bacteria 291 6.129999999999998e-74   NTclustered gi|1712629967|gb|CP036279.1| 2527975 g18331 i0 86.567 78.4221556886228 268 30 79 4 72 334 1830709 1830443 Planctomycetes bacterium Pan216 chromosome, complete genome blastn 26193 291 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Kolteriales Kolteriaceae Kolteria Kolteria novifilia
9369006 9369006 PRJNA451191_P_NODE_55868_length_198_cov_2.598540_g55597_i0 PRJNA451191 55868 198 2.59854 5.1451092 Rosistilla carotiformis 2528017 Bacteria Bacteria 172 1.26e-38   NTclustered gi|1712756907|gb|CP036348.1| 2528017 g55597 i0 85.89 69.2777777777778 163 21 82 2 1 162 1459841 1460002 Rosistilla carotiformis strain Poly24 chromosome blastn 13717 172 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Rosistilla Rosistilla carotiformis
14469413 14469413 PRJNA451191_P_NODE_41252_length_222_cov_1.211180_g40981_i0 PRJNA451191 41252 222 1.21118 2.6888196 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 206 1.43e-48   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g40981 i0 83.482 506.864864864865 224 34 100 3 1 222 7051812 7052034 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 112524 206 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
22116525 22116525 PRJNA451191_P_NODE_20018_length_321_cov_1.746154_g19747_i0 PRJNA451191 20018 321 1.746154 5.60515434 Telmatocola sphagniphila 1123043 Bacteria Bacteria 268 2.7499999999999998e-67   NTclustered gi|2041266541|gb|CP074694.1| 1123043 g19747 i0 83.007 94.0591900311527 306 42 93 10 22 321 3724183 3723882 Telmatocola sphagniphila strain SP2T chromosome, complete genome blastn 30193 268 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Telmatocola Telmatocola sphagniphila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;