RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA451191", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA451191 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6817952 6817952 PRJNA451191_P_NODE_2546_length_1089_cov_57.668288_g2350_i0 PRJNA451191 2546 1089 57.668288 628.00765632 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 1452 0   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g2350 i0 90.759 274.144168962351 1093 93 100 7 1 1089 1252135 1251047 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 298543 1452 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
23393262 23393262 PRJNA451191_P_NODE_52399_length_204_cov_1.587413_g52128_i0 PRJNA451191 52399 204 1.587413 3.23832252 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 202 1.67e-47   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g52128 i0 90.728 3.9656862745098 151 14 74 0 1 151 1251992 1252142 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 809 202 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;