RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA450632", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA450632 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11918187 11918187 PRJNA450632_P_NODE_23090_length_154_cov_1.285714_g22911_i0 PRJNA450632 23090 154 1.285714 1.97999956 Labilithrix luteola 1391654 Bacteria Bacteria 263 5.36e-66   NTclustered gi|913610804|gb|CP012333.1| 1391654 g22911 i0 97.403 438.415584415584 154 4 100 0 1 154 3943916 3944069 Labilithrix luteola strain DSM 27648, complete genome blastn 67516 263 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
13846107 13846107 PRJNA450632_P_NODE_8671_length_297_cov_0.977099_g8492_i0 PRJNA450632 8671 297 0.977099 2.90198403 Myxococcia 32015 Bacteria Bacteria 409 1.42e-109   NTclustered gi|169977285|emb|AM946600.1| 52 g8492 i0 91.639 149.185185185185 299 20 100 4 1 297 2527 2232 Chondromyces crocatus ajudazol biosynthesis gene cluster, strain Cmc5 blastn 44308 409 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Chondromyces Chondromyces crocatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;