RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA450632" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA450632 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28655177 28655177 PRJNA450632_P_NODE_17607_length_184_cov_1.053691_g17428_i0 PRJNA450632 17607 184 1.053691 1.93879144 Thermoplasmata archaeon 1906666 Archaea Archaea 42 0.0319   NR HEV2429800.1 1906666 g17428 i0 45.9 0.603260869565217 37 20 60.3 0 172 62 43 79 HEV2429800.1 DNA methyltransferase [Thermoplasmata archaeon] diamond 111 42 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
31561647 31561647 PRJNA450632_P_NODE_18896_length_175_cov_1.757143_g18717_i0 PRJNA450632 18896 175 1.757143 3.07500025 Methanofollis liminatans 2201 Archaea Archaea 41.2 0.0184   NR WP_245529349.1 2201 g18717 i0 46.3 0.702857142857143 41 22 70.3 0 157 35 19 59 WP_245529349.1 Sjogren's syndrome/scleroderma autoantigen 1 family protein [Methanofollis liminatans] diamond 123 41.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis liminatans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;