RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA450632", tax_clade = "Opisthokonta" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA450632 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6817232 6817232 PRJNA450632_P_NODE_24046_length_150_cov_1.634783_g23867_i0 PRJNA450632 24046 150 1.634783 2.4521745 Drymonia dodonaea 988176 Arthropoda Arthropoda 65.8 1.57e-6   NTclustered gi|2918369730|emb|OZ237797.1| 988176 g23867 i0 84.722 0.48 72 4 47 5 69 138 11309060 11309126 Drymonia dodonaea genome assembly, chromosome: 4 blastn 72 65.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Notodontidae Drymonia Drymonia dodonaea
9367031 9367031 PRJNA450632_P_NODE_10528_length_260_cov_1.053333_g10349_i0 PRJNA450632 10528 260 1.053333 2.7386658 Bactrocera neohumeralis 98809 Arthropoda Arthropoda 270 6.0099999999999985e-68   NTclustered gi|2293658778|ref|XM_050484520.1| 98809 g10349 i0 86.64 84.8692307692308 247 29 94 4 14 258 1710 1466 PREDICTED: Bactrocera neohumeralis heat shock 70 kDa protein-like (LOC126766822), mRNA blastn 22066 270 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Diptera Tephritidae Bactrocera Bactrocera neohumeralis
24044380 24044380 PRJNA450632_P_NODE_15859_length_197_cov_1.845679_g15680_i0 PRJNA450632 15859 197 1.845679 3.63598763 root 1 Root_unresolved Root_unresolved 122 1.2799999999999999e-23   NTclustered gi|1509808332|ref|XM_001972409.3| 7220 g15680 i0 82.639 35.9390862944162 144 19 72 5 1 141 698 558 PREDICTED: Drosophila erecta 60S ribosomal protein L10a-2 (LOC6544610), mRNA blastn 7080 122 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Diptera Drosophilidae Drosophila Drosophila erecta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;