RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA450343", tax_phylum = "Thermodesulfobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA450343 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29633491 29633491 PRJNA450343_P_NODE_6910_length_204_cov_1.245161_g6842_i0 PRJNA450343 6910 204 1.245161 2.54012844 Syntrophobacterales bacterium 2282155 Bacteria Bacteria 48.5 1.21e-4   NR MCD6153815.1 2282155 g6842 i0 65.9 0.647058823529412 44 12 64.7 2 72 203 131 171 MCD6153815.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT [Syntrophobacterales bacterium] diamond 132 48.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales     Syntrophobacterales bacterium
32793955 32793955 PRJNA450343_P_NODE_10000_length_172_cov_1.243902_g9932_i0 PRJNA450343 10000 172 1.243902 2.13951144 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 52.8 4.21e-6   NR MEE9214174.1 2202153 g9932 i0 44.4 0.941860465116279 54 30 94.2 0 168 7 500 553 MEE9214174.1 enoyl-CoA hydratase-related protein [Thermodesulfobacteriota bacterium] diamond 162 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;