RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA450343", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA450343 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26917877 26917877 PRJNA450343_P_NODE_13562_length_162_cov_0.902655_g13494_i0 PRJNA450343 13562 162 0.902655 1.4623011 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 42.7 0.0124   NR TNF38626.1 2026735 g13494 i0 45.9 0.685185185185185 37 19 66.7 1 15 122 430 466 TNF38626.1 MAG: hypothetical protein EP329_00045 [Deltaproteobacteria bacterium] diamond 111 42.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27202307 27202307 PRJNA450343_P_NODE_3142_length_303_cov_1.291339_g3074_i0 PRJNA450343 3142 303 1.291339 3.91275717 Myxococcota bacterium 2818507 Bacteria Bacteria 43.9 0.0263   NR MEM7678989.1 2818507 g3074 i0 35.6 0.861386138613861 87 50 80.2 2 256 14 138 224 MEM7678989.1 FAD-dependent oxidoreductase [Myxococcota bacterium] diamond 261 43.9 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32873307 32873307 PRJNA450343_P_NODE_1400_length_473_cov_1.356132_g1332_i0 PRJNA450343 1400 473 1.356132 6.41450436 Myxococcia 32015 Bacteria Bacteria 69.3 1.24e-10   NR MBL8627311.1 2026763 g1332 i0 37 2.13107822410148 162 76 93.2 9 32 472 53 203 MBL8627311.1 serine protease [Myxococcales bacterium] diamond 1008 69.7 0.994261119081779 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;