RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA450343" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA450343 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1713900 1713900 PRJNA450343_P_NODE_12242_length_164_cov_0.886957_g12174_i0 PRJNA450343 12242 164 0.886957 1.45460948 Bacillaria paxillifer 3003 SAR_Eukaryotes SAR_Eukaryotes 241 2.72e-59   NTclustered gi|2202538966|gb|OM891872.1| 3003 g12174 i0 93.252 81.609756097561 163 11 99 0 2 164 4698 4536 Bacillaria paxillifer small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13384 241 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Bacillaria Bacillaria paxillifer
18290681 18290681 PRJNA450343_P_NODE_11935_length_165_cov_0.879310_g11867_i0 PRJNA450343 11935 165 0.87931 1.4508615 Naviculales sp. 2126271 SAR_Eukaryotes SAR_Eukaryotes 289 9.66e-74   NTclustered gi|2633519340|gb|OR805654.1| 2126271 g11867 i0 98.182 197.878787878788 165 3 100 0 1 165 121253 121417 Naviculales sp. strain SZCZO2114 plastid, complete genome blastn 32650 289 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales     Naviculales sp.
27503300 27503300 PRJNA450343_P_NODE_12983_length_163_cov_0.894737_g12915_i0 PRJNA450343 12983 163 0.894737 1.45842131 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 46.2 7.29e-4   NR OEU11196.1 635003 g12915 i0 55.2 1.38036809815951 29 13 53.4 0 89 3 39 67 OEU11196.1 hypothetical protein FRACYDRAFT_246308 [Fragilariopsis cylindrus CCMP1102] diamond 225 46.2 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Fragilariopsis Fragilariopsis cylindrus
28829107 28829107 PRJNA450343_P_NODE_4308_length_256_cov_1.231884_g4240_i0 PRJNA450343 4308 256 1.231884 3.15362304 Bacillariophyceae 33849 SAR_Eukaryotes SAR_Eukaryotes 93.2 1.54e-21   NR OEU21027.1 635003 g4240 i0 58.3 3.90234375 84 32 97.3 3 249 1 98 179 OEU21027.1 winged helix DNA-binding domain-containing protein [Fragilariopsis cylindrus CCMP1102] diamond 999 93.2 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Fragilariopsis Fragilariopsis cylindrus
30424009 30424009 PRJNA450343_P_NODE_11253_length_166_cov_0.871795_g11185_i0 PRJNA450343 11253 166 0.871795 1.4471797 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 66.2 6.76e-11   NR KAI2507300.1 210448 g11185 i0 62.5 1.96987951807229 56 20 99.4 1 1 165 462 517 KAI2507300.1 hypothetical protein MHU86_7136 [Fragilaria crotonensis] diamond 327 66.2 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis
31371846 31371846 PRJNA450343_P_NODE_12576_length_164_cov_0.886957_g12508_i0 PRJNA450343 12576 164 0.886957 1.45460948 Phaeodactylum tricornutum CCAP 1 2850 SAR_Eukaryotes SAR_Eukaryotes 83.2 7.05e-17   NR XP_002181347.1 556484 g12508 i0 77.4 0.969512195121951 53 12 97 0 164 6 282 334 XP_002181347.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1] diamond 159 83.2 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;